Towards reusability of computational experiments: Capturing and sharing Research Objects from knowledge discovery processes

A. Lefebvre; M. Spruit; W Omta

doi:10.5220/0005631604560462

Towards reusability of computational experiments: Capturing and sharing Research Objects from knowledge discovery processes

A. Lefebvre, M. Spruit, W Omta

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

Abstract

Calls for more reproducible research by sharing code and data are released in a large number of fields from biomedical science to signal processing. At the same time, the urge to solve data analysis bottlenecks in the biomedical field generates the need for more interactive data analytics solutions. These interactive solutions are oriented towards wet lab users whereas bioinformaticians favor custom analysis tools. In this position paper we elaborate on why Reproducible Research, by presenting code and data sharing as a gold standard for reproducibility misses important challenges in data analytics. We suggest new ways to design interactive tools embedding constraints of reusability with data exploration. Finally, we seek to integrate our solution
with Research Objects as they are expected to bring promising advances in reusability and partial reproducibility of computational work.

Original language	English
Title of host publication	KDIR 2015 - Proceedings of the International Conference on Knowledge Discovery and Information Retrieval, part of the 7th International Joint Conference on Knowledge Discovery, Knowledge Engineering and Knowledge Management (IC3K 2015), Volume 1, Lisbon, Portugal, November 12-14, 2015
Place of Publication	Lisbon, Portugal
Publisher	SciTePress
Pages	456–462
Number of pages	7
Volume	1
DOIs	https://doi.org/10.5220/0005631604560462
Publication status	Published - 2015

Keywords

Knowledge Discovery
Reproducible Research
Bioinformatics
Research Objects
Software Development

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10.5220/0005631604560462

KDIR_2015_86Final published version, 442 KBLicence: Unspecified

Cite this

Lefebvre, A., Spruit, M., & Omta, W. (2015). Towards reusability of computational experiments: Capturing and sharing Research Objects from knowledge discovery processes. In KDIR 2015 - Proceedings of the International Conference on Knowledge Discovery and Information Retrieval, part of the 7th International Joint Conference on Knowledge Discovery, Knowledge Engineering and Knowledge Management (IC3K 2015), Volume 1, Lisbon, Portugal, November 12-14, 2015 (Vol. 1, pp. 456–462). SciTePress. https://doi.org/10.5220/0005631604560462

Lefebvre, A. ; Spruit, M. ; Omta, W. / Towards reusability of computational experiments: Capturing and sharing Research Objects from knowledge discovery processes. KDIR 2015 - Proceedings of the International Conference on Knowledge Discovery and Information Retrieval, part of the 7th International Joint Conference on Knowledge Discovery, Knowledge Engineering and Knowledge Management (IC3K 2015), Volume 1, Lisbon, Portugal, November 12-14, 2015. Vol. 1 Lisbon, Portugal : SciTePress, 2015. pp. 456–462

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abstract = "Calls for more reproducible research by sharing code and data are released in a large number of fields from biomedical science to signal processing. At the same time, the urge to solve data analysis bottlenecks in the biomedical field generates the need for more interactive data analytics solutions. These interactive solutions are oriented towards wet lab users whereas bioinformaticians favor custom analysis tools. In this position paper we elaborate on why Reproducible Research, by presenting code and data sharing as a gold standard for reproducibility misses important challenges in data analytics. We suggest new ways to design interactive tools embedding constraints of reusability with data exploration. Finally, we seek to integrate our solutionwith Research Objects as they are expected to bring promising advances in reusability and partial reproducibility of computational work.",

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author = "A. Lefebvre and M. Spruit and W Omta",

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language = "English",

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pages = "456–462",

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Lefebvre, A, Spruit, M & Omta, W 2015, Towards reusability of computational experiments: Capturing and sharing Research Objects from knowledge discovery processes. in KDIR 2015 - Proceedings of the International Conference on Knowledge Discovery and Information Retrieval, part of the 7th International Joint Conference on Knowledge Discovery, Knowledge Engineering and Knowledge Management (IC3K 2015), Volume 1, Lisbon, Portugal, November 12-14, 2015. vol. 1, SciTePress, Lisbon, Portugal, pp. 456–462. https://doi.org/10.5220/0005631604560462

Towards reusability of computational experiments: Capturing and sharing Research Objects from knowledge discovery processes. / Lefebvre, A.; Spruit, M.; Omta, W.
KDIR 2015 - Proceedings of the International Conference on Knowledge Discovery and Information Retrieval, part of the 7th International Joint Conference on Knowledge Discovery, Knowledge Engineering and Knowledge Management (IC3K 2015), Volume 1, Lisbon, Portugal, November 12-14, 2015. Vol. 1 Lisbon, Portugal: SciTePress, 2015. p. 456–462.

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

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AB - Calls for more reproducible research by sharing code and data are released in a large number of fields from biomedical science to signal processing. At the same time, the urge to solve data analysis bottlenecks in the biomedical field generates the need for more interactive data analytics solutions. These interactive solutions are oriented towards wet lab users whereas bioinformaticians favor custom analysis tools. In this position paper we elaborate on why Reproducible Research, by presenting code and data sharing as a gold standard for reproducibility misses important challenges in data analytics. We suggest new ways to design interactive tools embedding constraints of reusability with data exploration. Finally, we seek to integrate our solutionwith Research Objects as they are expected to bring promising advances in reusability and partial reproducibility of computational work.

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KW - Software Development

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Lefebvre A, Spruit M, Omta W. Towards reusability of computational experiments: Capturing and sharing Research Objects from knowledge discovery processes. In KDIR 2015 - Proceedings of the International Conference on Knowledge Discovery and Information Retrieval, part of the 7th International Joint Conference on Knowledge Discovery, Knowledge Engineering and Knowledge Management (IC3K 2015), Volume 1, Lisbon, Portugal, November 12-14, 2015. Vol. 1. Lisbon, Portugal: SciTePress. 2015. p. 456–462 doi: 10.5220/0005631604560462

Towards reusability of computational experiments: Capturing and sharing Research Objects from knowledge discovery processes

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