Structural Biology in the Clouds: The WeNMR-EOSC Ecosystem

Rodrigo V. Honorato, Panagiotis I. Koukos, Brian Jiménez-García, Andrei Tsaregorodtsev, Marco Verlato, Andrea Giachetti, Antonio Rosato, Alexandre M.J.J. Bonvin*

*Corresponding author for this work

Research output: Contribution to journalArticleAcademicpeer-review

Abstract

Structural biology aims at characterizing the structural and dynamic properties of biological macromolecules at atomic details. Gaining insight into three dimensional structures of biomolecules and their interactions is critical for understanding the vast majority of cellular processes, with direct applications in health and food sciences. Since 2010, the WeNMR project (www.wenmr.eu) has implemented numerous web-based services to facilitate the use of advanced computational tools by researchers in the field, using the high throughput computing infrastructure provided by EGI. These services have been further developed in subsequent initiatives under H2020 projects and are now operating as Thematic Services in the European Open Science Cloud portal (www.eosc-portal.eu), sending >12 millions of jobs and using around 4,000 CPU-years per year. Here we review 10 years of successful e-infrastructure solutions serving a large worldwide community of over 23,000 users to date, providing them with user-friendly, web-based solutions that run complex workflows in structural biology. The current set of active WeNMR portals are described, together with the complex backend machinery that allows distributed computing resources to be harvested efficiently.

Original languageEnglish
Article number729513
Pages (from-to)1-7
JournalFrontiers in Molecular Biosciences
Volume8
DOIs
Publication statusPublished - 28 Jul 2021

Bibliographical note

Funding Information:
This work is co-funded by the Horizon 2020 projects EOSC-hub (Grant number 777536), EGI-ACE (Grant number 101017567) and BioExcel (Grant numbers 823830 and 675728) and by a computing grant from NWO-ENW (project number 2019.053).

Publisher Copyright:
© Copyright © 2021 Honorato, Koukos, Jiménez-García, Tsaregorodtsev, Verlato, Giachetti, Rosato and Bonvin.

Funding

This work is co-funded by the Horizon 2020 projects EOSC-hub (Grant number 777536), EGI-ACE (Grant number 101017567) and BioExcel (Grant numbers 823830 and 675728) and by a computing grant from NWO-ENW (project number 2019.053).

Keywords

  • distributed computing
  • e-infrastructure
  • structural biology
  • web portal
  • web services

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