Phylogenomic Investigation of IncI1-Iγ Plasmids Harboring blaCMY-2 and blaSHV-12 in Salmonella enterica and Escherichia coli in Multiple Countries

Luis Ricardo Castellanos; Linda van der Graaf-van Bloois; Pilar Donado-Godoy; Dik J Mevius; Jaap A Wagenaar; Joost Hordijk; Aldert Zomer

doi:10.1128/AAC.02546-18

Phylogenomic Investigation of IncI1-Iγ Plasmids Harboring blaCMY-2 and blaSHV-12 in Salmonella enterica and Escherichia coli in Multiple Countries

Luis Ricardo Castellanos
, Linda van der Graaf-van Bloois
, Pilar Donado-Godoy
, Dik J Mevius
, Jaap A Wagenaar
, Joost Hordijk
, Aldert Zomer

Colombian Integrated Program for Antimicrobial Resistance Surveillance - COIPARS, Corporación Colombiana de Investigación Agropecuaria - AGROSAVIA, Cundinamarca, Colombia.

Research output: Contribution to journal › Article › Academic › peer-review

Abstract

The objective of this study was to elucidate the genetic and evolutionary relatedness of blaCMY-2- and blaSHV-12-carrying IncI1-Iγ plasmids. Phylogenomic analysis based on core genome alignments and gene presence/absence was performed for different IncI1-Iγ Sequence Types (STs). Most IncI1-Iγ/ST12 and IncI1-Iγ/ST231 plasmids had near-identical core genomes. The data suggests that widespread occurring blaCMY-2-carrying IncI1-Iγ/ST12 plasmids originate from a common ancestor. In contrast, blaSHV-12 was inserted independently into different IncI1-Iγ/ST231-related plasmids.

Original language	English
Article number	e02546-18
Number of pages	6
Journal	Antimicrobial Agents and Chemotherapy
Volume	63
Issue number	7
Early online date	2019
DOIs	https://doi.org/10.1128/AAC.02546-18
Publication status	Published - Jul 2019

Keywords

ISEcp1
IS1294
IS26
sugE
blc
deoR
Salmonella Paratyphi B var. JAva
S. Heidelberg
broiler
chicken

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Antimicrobial Agents and Chemotherapy-2019-Castellanos-e02546-18.fullFinal published version, 865 KB

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Castellanos, L. R., van der Graaf-van Bloois, L., Donado-Godoy, P., Mevius, D. J., Wagenaar, J. A., Hordijk, J., & Zomer, A. (2019). Phylogenomic Investigation of IncI1-Iγ Plasmids Harboring blaCMY-2 and blaSHV-12 in Salmonella enterica and Escherichia coli in Multiple Countries. Antimicrobial Agents and Chemotherapy, 63(7), Article e02546-18. https://doi.org/10.1128/AAC.02546-18

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title = "Phylogenomic Investigation of IncI1-Iγ Plasmids Harboring blaCMY-2 and blaSHV-12 in Salmonella enterica and Escherichia coli in Multiple Countries",

abstract = "The objective of this study was to elucidate the genetic and evolutionary relatedness of blaCMY-2- and blaSHV-12-carrying IncI1-Iγ plasmids. Phylogenomic analysis based on core genome alignments and gene presence/absence was performed for different IncI1-Iγ Sequence Types (STs). Most IncI1-Iγ/ST12 and IncI1-Iγ/ST231 plasmids had near-identical core genomes. The data suggests that widespread occurring blaCMY-2-carrying IncI1-Iγ/ST12 plasmids originate from a common ancestor. In contrast, blaSHV-12 was inserted independently into different IncI1-Iγ/ST231-related plasmids.",

keywords = "ISEcp1, IS1294, IS26, sugE, blc, deoR, Salmonella Paratyphi B var. JAva, S. Heidelberg, broiler, chicken",

author = "Castellanos, \{Luis Ricardo\} and \{van der Graaf-van Bloois\}, Linda and Pilar Donado-Godoy and Mevius, \{Dik J\} and Wagenaar, \{Jaap A\} and Joost Hordijk and Aldert Zomer",

note = "Copyright {\textcopyright} 2019 American Society for Microbiology.",

year = "2019",

month = jul,

doi = "10.1128/AAC.02546-18",

language = "English",

volume = "63",

journal = "Antimicrobial Agents and Chemotherapy",

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publisher = "American Society for Microbiology",

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Castellanos, LR, van der Graaf-van Bloois, L, Donado-Godoy, P, Mevius, DJ, Wagenaar, JA, Hordijk, J & Zomer, A 2019, 'Phylogenomic Investigation of IncI1-Iγ Plasmids Harboring blaCMY-2 and blaSHV-12 in Salmonella enterica and Escherichia coli in Multiple Countries', Antimicrobial Agents and Chemotherapy, vol. 63, no. 7, e02546-18. https://doi.org/10.1128/AAC.02546-18

Phylogenomic Investigation of IncI1-Iγ Plasmids Harboring blaCMY-2 and blaSHV-12 in Salmonella enterica and Escherichia coli in Multiple Countries. / Castellanos, Luis Ricardo; van der Graaf-van Bloois, Linda; Donado-Godoy, Pilar et al.
In: Antimicrobial Agents and Chemotherapy, Vol. 63, No. 7, e02546-18, 07.2019.

Research output: Contribution to journal › Article › Academic › peer-review

TY - JOUR

T1 - Phylogenomic Investigation of IncI1-Iγ Plasmids Harboring blaCMY-2 and blaSHV-12 in Salmonella enterica and Escherichia coli in Multiple Countries

AU - Castellanos, Luis Ricardo

AU - van der Graaf-van Bloois, Linda

AU - Donado-Godoy, Pilar

AU - Mevius, Dik J

AU - Wagenaar, Jaap A

AU - Hordijk, Joost

AU - Zomer, Aldert

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AB - The objective of this study was to elucidate the genetic and evolutionary relatedness of blaCMY-2- and blaSHV-12-carrying IncI1-Iγ plasmids. Phylogenomic analysis based on core genome alignments and gene presence/absence was performed for different IncI1-Iγ Sequence Types (STs). Most IncI1-Iγ/ST12 and IncI1-Iγ/ST231 plasmids had near-identical core genomes. The data suggests that widespread occurring blaCMY-2-carrying IncI1-Iγ/ST12 plasmids originate from a common ancestor. In contrast, blaSHV-12 was inserted independently into different IncI1-Iγ/ST231-related plasmids.

KW - ISEcp1

KW - IS1294

KW - IS26

KW - sugE

KW - blc

KW - deoR

KW - Salmonella Paratyphi B var. JAva

KW - S. Heidelberg

KW - broiler

KW - chicken

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DO - 10.1128/AAC.02546-18

M3 - Article

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SN - 0066-4804

VL - 63

JO - Antimicrobial Agents and Chemotherapy

JF - Antimicrobial Agents and Chemotherapy

IS - 7

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ER -

Phylogenomic Investigation of IncI1-Iγ Plasmids Harboring blaCMY-2 and blaSHV-12 in Salmonella enterica and Escherichia coli in Multiple Countries

Abstract

Keywords

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