Abstract
The pdb-tools are a collection of Python scripts for working with molecular structure data in the Protein Data Bank (PDB) format. They allow users to edit, convert, and validate PDB files, from the command-line, in a simple but efficient manner. The pdb-tools are implemented in Python, without any external dependencies, and are freely available under the open-source Apache License at https://github.com/haddocking/pdb-tools/ and on PyPI.
Original language | English |
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Article number | 1961 |
Journal | F1000Research |
Volume | 2018 |
Issue number | 7 |
DOIs | |
Publication status | Published - 1 Jan 2018 |
Funding
Grant information: J.P.G.L.M.R acknowledges funding from a Niels Stensen Fellowship and NIH grant R35GM122543. M.T. and A.M.J.J.B were supported by the European H2020 e-Infrastructure grant BioExcel (grant no. 675728).
Keywords
- Bioinformatics
- Chemistry
- Macromolecules
- PDB
- Protein structure
- Python
- Structural biology