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Motor properties from persistence: A linear molecular walker lacking spatial and temporal asymmetry

  • Martin J. Zuckermann
  • , Christopher N. Angstmann
  • , Regina Schmitt
  • , Gerhard A. Blab
  • , Elizabeth H.C. Bromley
  • , Nancy R. Forde
  • , Heiner Linke
  • , Paul M.G. Curmi
  • Simon Fraser University
  • University of New South Wales
  • Lund University
  • Durham University

Research output: Contribution to journalArticleAcademicpeer-review

Abstract

The stepping direction of linear molecular motors is usually defined by a spatial asymmetry of the motor, its track, or both. Here we present a model for a molecular walker that undergoes biased directional motion along a symmetric track in the presence of a temporally symmetric chemical cycle. Instead of using asymmetry, directionality is achieved by persistence. At small load force the walker can take on average thousands of steps in a given direction until it stochastically reverses direction. We discuss a specific experimental implementation of a synthetic motor based on this design and find, using Langevin and Monte Carlo simulations, that a realistic walker can work against load forces on the order of picoNewtons with an efficiency of ∼18%, comparable to that of kinesin. In principle, the walker can be turned into a permanent motor by externally monitoring the walker's momentary direction of motion, and using feedback to adjust the direction of a load force. We calculate the thermodynamic cost of using feedback to enhance motor performance in terms of the Shannon entropy, and find that it reduces the efficiency of a realistic motor only marginally. We discuss the implications for natural protein motor performance in the context of the strong performance of this design based only on a thermal ratchet.

Original languageEnglish
Article number055017
JournalNew Journal of Physics
Volume17
DOIs
Publication statusPublished - 1 May 2015

Bibliographical note

Publisher Copyright:
© 2015 IOP Publishing Ltd and Deutsche Physikalische Gesellschaft.

Keywords

  • artificial protein motor
  • Brownian ratchet
  • feedback control
  • kinesin
  • Langevin dynamics
  • molecular motor

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