TY - JOUR
T1 - Motor properties from persistence
T2 - A linear molecular walker lacking spatial and temporal asymmetry
AU - Zuckermann, Martin J.
AU - Angstmann, Christopher N.
AU - Schmitt, Regina
AU - Blab, Gerhard A.
AU - Bromley, Elizabeth H.C.
AU - Forde, Nancy R.
AU - Linke, Heiner
AU - Curmi, Paul M.G.
N1 - Publisher Copyright:
© 2015 IOP Publishing Ltd and Deutsche Physikalische Gesellschaft.
PY - 2015/5/1
Y1 - 2015/5/1
N2 - The stepping direction of linear molecular motors is usually defined by a spatial asymmetry of the motor, its track, or both. Here we present a model for a molecular walker that undergoes biased directional motion along a symmetric track in the presence of a temporally symmetric chemical cycle. Instead of using asymmetry, directionality is achieved by persistence. At small load force the walker can take on average thousands of steps in a given direction until it stochastically reverses direction. We discuss a specific experimental implementation of a synthetic motor based on this design and find, using Langevin and Monte Carlo simulations, that a realistic walker can work against load forces on the order of picoNewtons with an efficiency of ∼18%, comparable to that of kinesin. In principle, the walker can be turned into a permanent motor by externally monitoring the walker's momentary direction of motion, and using feedback to adjust the direction of a load force. We calculate the thermodynamic cost of using feedback to enhance motor performance in terms of the Shannon entropy, and find that it reduces the efficiency of a realistic motor only marginally. We discuss the implications for natural protein motor performance in the context of the strong performance of this design based only on a thermal ratchet.
AB - The stepping direction of linear molecular motors is usually defined by a spatial asymmetry of the motor, its track, or both. Here we present a model for a molecular walker that undergoes biased directional motion along a symmetric track in the presence of a temporally symmetric chemical cycle. Instead of using asymmetry, directionality is achieved by persistence. At small load force the walker can take on average thousands of steps in a given direction until it stochastically reverses direction. We discuss a specific experimental implementation of a synthetic motor based on this design and find, using Langevin and Monte Carlo simulations, that a realistic walker can work against load forces on the order of picoNewtons with an efficiency of ∼18%, comparable to that of kinesin. In principle, the walker can be turned into a permanent motor by externally monitoring the walker's momentary direction of motion, and using feedback to adjust the direction of a load force. We calculate the thermodynamic cost of using feedback to enhance motor performance in terms of the Shannon entropy, and find that it reduces the efficiency of a realistic motor only marginally. We discuss the implications for natural protein motor performance in the context of the strong performance of this design based only on a thermal ratchet.
KW - artificial protein motor
KW - Brownian ratchet
KW - feedback control
KW - kinesin
KW - Langevin dynamics
KW - molecular motor
UR - http://www.scopus.com/inward/record.url?scp=84930010334&partnerID=8YFLogxK
U2 - 10.1088/1367-2630/17/5/055017
DO - 10.1088/1367-2630/17/5/055017
M3 - Article
AN - SCOPUS:84930010334
SN - 1367-2630
VL - 17
JO - New Journal of Physics
JF - New Journal of Physics
M1 - 055017
ER -