Molecular tools and analytical approaches for the characterization of farm animal genetic diversity

J. A. Lenstra; L. F. Groeneveld; H. Eding; J. Kantanen; J. L. Williams; P. Taberlet; E. L. Nicolazzi; J. Sölkner; H. Simianer; E. Ciani; J. F. Garcia; M. W. Bruford; P. Ajmone-Marsan; S. Weigend

doi:10.1111/j.1365-2052.2011.02309.x

Molecular tools and analytical approaches for the characterization of farm animal genetic diversity

J. A. Lenstra^*
, L. F. Groeneveld
, H. Eding
, J. Kantanen
, J. L. Williams
, P. Taberlet
, E. L. Nicolazzi
, J. Sölkner
, H. Simianer
, E. Ciani
, J. F. Garcia
, M. W. Bruford
, P. Ajmone-Marsan
, S. Weigend

^*Corresponding author for this work

Research output: Contribution to journal › Article › Academic › peer-review

Abstract

Genetic studies of livestock populations focus on questions of domestication, within- and among-breed diversity, breed history and adaptive variation. In this review, we describe the use of different molecular markers and methods for data analysis used to address these questions. There is a clear trend towards the use of single nucleotide polymorphisms and whole-genome sequence information, the application of Bayesian or Approximate Bayesian analysis and the use of adaptive next to neutral diversity to support decisions on conservation. © 2012 The Authors, Animal Genetics © 2012 Stichting International Foundation for Animal Genetics.

Original language	English
Pages (from-to)	483-502
Number of pages	20
Journal	Animal Genetics
Volume	43
Issue number	5
DOIs	https://doi.org/10.1111/j.1365-2052.2011.02309.x
Publication status	Published - 1 Oct 2012

Keywords

adaptive variation
breed history
domestication
genetic diversity
livestock
population genetics
review

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10.1111/j.1365-2052.2011.02309.x

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Lenstra, J. A., Groeneveld, L. F., Eding, H., Kantanen, J., Williams, J. L., Taberlet, P., Nicolazzi, E. L., Sölkner, J., Simianer, H., Ciani, E., Garcia, J. F., Bruford, M. W., Ajmone-Marsan, P., & Weigend, S. (2012). Molecular tools and analytical approaches for the characterization of farm animal genetic diversity. Animal Genetics, 43(5), 483-502. https://doi.org/10.1111/j.1365-2052.2011.02309.x

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abstract = "Genetic studies of livestock populations focus on questions of domestication, within- and among-breed diversity, breed history and adaptive variation. In this review, we describe the use of different molecular markers and methods for data analysis used to address these questions. There is a clear trend towards the use of single nucleotide polymorphisms and whole-genome sequence information, the application of Bayesian or Approximate Bayesian analysis and the use of adaptive next to neutral diversity to support decisions on conservation. {\textcopyright} 2012 The Authors, Animal Genetics {\textcopyright} 2012 Stichting International Foundation for Animal Genetics.",

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doi = "10.1111/j.1365-2052.2011.02309.x",

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Lenstra, JA, Groeneveld, LF, Eding, H, Kantanen, J, Williams, JL, Taberlet, P, Nicolazzi, EL, Sölkner, J, Simianer, H, Ciani, E, Garcia, JF, Bruford, MW, Ajmone-Marsan, P & Weigend, S 2012, 'Molecular tools and analytical approaches for the characterization of farm animal genetic diversity', Animal Genetics, vol. 43, no. 5, pp. 483-502. https://doi.org/10.1111/j.1365-2052.2011.02309.x

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T1 - Molecular tools and analytical approaches for the characterization of farm animal genetic diversity

AU - Lenstra, J. A.

AU - Groeneveld, L. F.

AU - Eding, H.

AU - Kantanen, J.

AU - Williams, J. L.

AU - Taberlet, P.

AU - Nicolazzi, E. L.

AU - Sölkner, J.

AU - Simianer, H.

AU - Ciani, E.

AU - Garcia, J. F.

AU - Bruford, M. W.

AU - Ajmone-Marsan, P.

AU - Weigend, S.

PY - 2012/10/1

Y1 - 2012/10/1

N2 - Genetic studies of livestock populations focus on questions of domestication, within- and among-breed diversity, breed history and adaptive variation. In this review, we describe the use of different molecular markers and methods for data analysis used to address these questions. There is a clear trend towards the use of single nucleotide polymorphisms and whole-genome sequence information, the application of Bayesian or Approximate Bayesian analysis and the use of adaptive next to neutral diversity to support decisions on conservation. © 2012 The Authors, Animal Genetics © 2012 Stichting International Foundation for Animal Genetics.

AB - Genetic studies of livestock populations focus on questions of domestication, within- and among-breed diversity, breed history and adaptive variation. In this review, we describe the use of different molecular markers and methods for data analysis used to address these questions. There is a clear trend towards the use of single nucleotide polymorphisms and whole-genome sequence information, the application of Bayesian or Approximate Bayesian analysis and the use of adaptive next to neutral diversity to support decisions on conservation. © 2012 The Authors, Animal Genetics © 2012 Stichting International Foundation for Animal Genetics.

KW - adaptive variation

KW - breed history

KW - domestication

KW - genetic diversity

KW - livestock

KW - population genetics

KW - review

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SN - 0268-9146

VL - 43

SP - 483

EP - 502

JO - Animal Genetics

JF - Animal Genetics

IS - 5

ER -

Molecular tools and analytical approaches for the characterization of farm animal genetic diversity

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Keywords

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