Histopathological biomarkers for predicting the tumour accumulation of nanomedicines

Jan Niklas May, Jennifer I. Moss, Florian Mueller, Susanne K. Golombek, Ilaria Biancacci, Larissa Rizzo, Asmaa Said Elshafei, Felix Gremse, Robert Pola, Michal Pechar, Tomáš Etrych, Svea Becker, Christian Trautwein, Roman D. Bülow, Peter Boor, Ruth Knuechel, Saskia von Stillfried, Gert Storm, Sanyogitta Puri, Simon T. BarryVolkmar Schulz, Fabian Kiessling, Marianne B. Ashford, Twan Lammers*

*Corresponding author for this work

Research output: Contribution to journalArticleAcademicpeer-review

Abstract

The clinical prospects of cancer nanomedicines depend on effective patient stratification. Here we report the identification of predictive biomarkers of the accumulation of nanomedicines in tumour tissue. By using supervised machine learning on data of the accumulation of nanomedicines in tumour models in mice, we identified the densities of blood vessels and of tumour-associated macrophages as key predictive features. On the basis of these two features, we derived a biomarker score correlating with the concentration of liposomal doxorubicin in tumours and validated it in three syngeneic tumour models in immunocompetent mice and in four cell-line-derived and six patient-derived tumour xenografts in mice. The score effectively discriminated tumours according to the accumulation of nanomedicines (high versus low), with an area under the receiver operating characteristic curve of 0.91. Histopathological assessment of 30 tumour specimens from patients and of 28 corresponding primary tumour biopsies confirmed the score’s effectiveness in predicting the tumour accumulation of liposomal doxorubicin. Biomarkers of the tumour accumulation of nanomedicines may aid the stratification of patients in clinical trials of cancer nanomedicines.

Original languageEnglish
Pages (from-to)1366-1378
Number of pages13
JournalNature Biomedical Engineering
Volume8
Issue number11
Early online date2024
DOIs
Publication statusPublished - Nov 2024

Bibliographical note

Publisher Copyright:
© The Author(s) 2024.

Funding

The authors acknowledge technical support by D. Mockel, D. Grigoreva and J. Baues. The authors also acknowledge financial support by the European Research Council (European Research Council consolidator grant 864121, Meta-Targeting and project number 101001791), the European Union (Next Generation European Union, National Institute for Cancer Research (Programme EXCELES, ID project no. LX22NPO5102), the German Research Foundation (GRK2375 (project number 331065168), SFB1066 (213555243), KFO5011 (445703531), LA2937/4-1, 322900939, 432698239 and 445703531), the German Federal Ministry of Research and Education (BMBF, Gezielter Wirkstofftransport, PP-TNBC, project number 16GW0319K and STOP-FSGS-01GM2202C), and the Czech Science Foundation (project number 22-12483S). The experiments performed by J.I.M. were funded by AstraZeneca and the AstraZeneca Postdoc Scheme.

FundersFunder number
European Research Council (European Research Council)864121, 101001791
European Union (Next Generation European Union, National Institute for Cancer Research (Programme EXCELES)LX22NPO5102
German Research FoundationGRK2375, 331065168, STOP-FSGS-01GM2202C), 445703531, LA2937/4-1, 322900939, 432698239, 16GW0319K
German Federal Ministry of Research and Education (BMBF, Gezielter Wirkstofftransport, PP-TNBC)16GW0319K, STOP-FSGS-01GM2202C
Czech Science Foundation22-12483S
AstraZeneca
AstraZeneca Postdoc Scheme

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