Highly parallelizable path sampling with minimal rejections using asynchronous replica exchange and infinite swaps

Daniel T. Zhang, Lukas Baldauf, Sander Roet, Anders Lervik, Titus S. van Erp*

*Corresponding author for this work

Research output: Contribution to journalArticleAcademicpeer-review

Abstract

Capturing rare yet pivotal events poses a significant challenge for molecular simulations. Path sampling provides a unique approach to tackle this issue without altering the potential energy landscape or dynamics, enabling recovery of both thermodynamic and kinetic information. However, despite its exponential acceleration compared to standard molecular dynamics, generating numerous trajectories can still require a long time. By harnessing our recent algorithmic innovations—particularly subtrajectory moves with high acceptance, coupled with asynchronous replica exchange featuring infinite swaps—we establish a highly parallelizable and rapidly converging path sampling protocol, compatible with diverse high-performance computing architectures. We demonstrate our approach on the liquid–vapor phase transition in superheated water, the unfolding of the chignolin protein, and water dissociation. The latter, performed at the ab initio level, achieves comparable statistical accuracy within days, in contrast to a previous study requiring over a year.
Original languageEnglish
Article numbere2318731121
Number of pages9
JournalProceedings of the National Academy of Sciences of the United States of America
Volume121
Issue number7
DOIs
Publication statusPublished - 13 Feb 2024

Keywords

  • Markov-chain Monte Carlo
  • asynchronous replica exchange
  • infinite swapping
  • path sampling
  • rare events

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