Gene and protein sequence features augment HLA class I ligand predictions

Kaspar Bresser; Benoit P Nicolet; Anita Jeko; Wei Wu; Fabricio Loayza-Puch; Reuven Agami; Albert J R Heck; Monika C Wolkers; Ton N Schumacher

doi:10.1016/j.celrep.2024.114418

Gene and protein sequence features augment HLA class I ligand predictions

Kaspar Bresser, Benoit P Nicolet, Anita Jeko, Wei Wu, Fabricio Loayza-Puch, Reuven Agami, Albert J R Heck, Monika C Wolkers, Ton N Schumacher^*

^*Corresponding author for this work

Research output: Contribution to journal › Comment/Letter to the editor › Academic › peer-review

Abstract

(Cell Reports 43, 114325; June 25, 2024) In the originally published version of this article, Figures 3G and 3I contained errors in the keys to the right of each chart. In the key for Figure 3G, the three green values were written as “A+SF _T+RNA,” “A+SF _T+RP,” and “A+SF _T+RNA+RP.” These have been changed to “A+RNA,” “A+RP,” and “A+RNA+RP,” respectively. In the key for Figure 3I, the three green values were written as “A+SF _T+RNA,” “A+SF _T+RP,” and “A+SF _T+RNA+RP.” These have been changed to “A+RNA,” “A+RP,” and “A+RNA+RP,” respectively. These errors have now been fixed online, and the authors apologize for any confusion they may have caused.

Original language	English
Article number	114418
Journal	Cell Reports
Volume	43
Issue number	7
Early online date	24 Jun 2024
DOIs	https://doi.org/10.1016/j.celrep.2024.114418
Publication status	Published - 23 Jul 2024

Bibliographical note

Publisher Copyright:
© 2024 The Author(s)

Funding

We would like to thank Mireille Toebes for helpful input during generation of the HLA class I ligandome dataset. We would like to thank Prof. Dr. Daniel Peeper for kindly providing the SK-MEL-95 and M026.X1 cell lines. This work was supported by Institute for Chemical Immunology (ICI) grant 003 (to T.N.S.).

Funders	Funder number
Institute for Chemical Immunology	003

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10.1016/j.celrep.2024.114418Licence: CC BY-NC-ND

1-s2.0-S2211124724007472-mainFinal published version, 2.05 MBLicence: CC BY-NC-ND

Cite this

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title = "Gene and protein sequence features augment HLA class I ligand predictions",

abstract = "(Cell Reports 43, 114325; June 25, 2024) In the originally published version of this article, Figures 3G and 3I contained errors in the keys to the right of each chart. In the key for Figure 3G, the three green values were written as “A+SF T+RNA,” “A+SF T+RP,” and “A+SF T+RNA+RP.” These have been changed to “A+RNA,” “A+RP,” and “A+RNA+RP,” respectively. In the key for Figure 3I, the three green values were written as “A+SF T+RNA,” “A+SF T+RP,” and “A+SF T+RNA+RP.” These have been changed to “A+RNA,” “A+RP,” and “A+RNA+RP,” respectively. These errors have now been fixed online, and the authors apologize for any confusion they may have caused.",

author = "Kaspar Bresser and Nicolet, {Benoit P} and Anita Jeko and Wei Wu and Fabricio Loayza-Puch and Reuven Agami and Heck, {Albert J R} and Wolkers, {Monika C} and Schumacher, {Ton N}",

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day = "23",

doi = "10.1016/j.celrep.2024.114418",

language = "English",

volume = "43",

journal = "Cell Reports",

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TY - JOUR

T1 - Gene and protein sequence features augment HLA class I ligand predictions

AU - Bresser, Kaspar

AU - Nicolet, Benoit P

AU - Jeko, Anita

AU - Wu, Wei

AU - Loayza-Puch, Fabricio

AU - Agami, Reuven

AU - Heck, Albert J R

AU - Wolkers, Monika C

AU - Schumacher, Ton N

PY - 2024/7/23

Y1 - 2024/7/23

N2 - (Cell Reports 43, 114325; June 25, 2024) In the originally published version of this article, Figures 3G and 3I contained errors in the keys to the right of each chart. In the key for Figure 3G, the three green values were written as “A+SF T+RNA,” “A+SF T+RP,” and “A+SF T+RNA+RP.” These have been changed to “A+RNA,” “A+RP,” and “A+RNA+RP,” respectively. In the key for Figure 3I, the three green values were written as “A+SF T+RNA,” “A+SF T+RP,” and “A+SF T+RNA+RP.” These have been changed to “A+RNA,” “A+RP,” and “A+RNA+RP,” respectively. These errors have now been fixed online, and the authors apologize for any confusion they may have caused.

AB - (Cell Reports 43, 114325; June 25, 2024) In the originally published version of this article, Figures 3G and 3I contained errors in the keys to the right of each chart. In the key for Figure 3G, the three green values were written as “A+SF T+RNA,” “A+SF T+RP,” and “A+SF T+RNA+RP.” These have been changed to “A+RNA,” “A+RP,” and “A+RNA+RP,” respectively. In the key for Figure 3I, the three green values were written as “A+SF T+RNA,” “A+SF T+RP,” and “A+SF T+RNA+RP.” These have been changed to “A+RNA,” “A+RP,” and “A+RNA+RP,” respectively. These errors have now been fixed online, and the authors apologize for any confusion they may have caused.

UR - http://www.scopus.com/inward/record.url?scp=85196712813&partnerID=8YFLogxK

U2 - 10.1016/j.celrep.2024.114418

DO - 10.1016/j.celrep.2024.114418

M3 - Comment/Letter to the editor

C2 - 38923456

SN - 2211-1247

VL - 43

JO - Cell Reports

JF - Cell Reports

IS - 7

M1 - 114418

ER -

Gene and protein sequence features augment HLA class I ligand predictions

Abstract

Bibliographical note

Funding

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