Abstract
Heterolobosea is one of the major protist groups in soils. While an increasing number of soil heterolobosean species has been described, we have likely only scratched the surface of heterolobosean diversity in soils. Here, we expand this knowledge by morphologically and molecularly classifying four novel strains. One was identified as Naegleria clarki, while the remaining three strains had no identical Blast hit against GenBank and could only be reliably identified to the genus level: two strains as Allovahlkampfia spp. and one strain as Vahlkampfia sp. One Allovahlkampfia strain was most closely affiliated with Allovahlkampfia sp. Nl64 and the other strain was affiliated with ‘Solumitrus’ palustris, which is now named Allovahlkampfia palustris comb.nov. As there are only two valid species described within Allovahlkampfia, we combined all published sequences related to Allovahlkampfia and propose five new groups within this genus. The last strain was most closely related, but clearly distinct from, Vahlkampfia orchilla, based on DNA barcoding. As such, we propose this amoeba as a new species named Vahlkampfia bulbosis n.sp. Together, our study extends the described diversity of soil heteroloboseans through the description of a new Vahlkampfia species and by revising the morphologically and phylogenetically diverse genus Allovahlkampfia.
Original language | English |
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Article number | 125870 |
Pages (from-to) | 1-16 |
Number of pages | 16 |
Journal | Protist |
Volume | 173 |
Issue number | 3 |
DOIs | |
Publication status | Published - Jun 2022 |
Bibliographical note
Funding Information:Z.G. was supported by Chinese Scholarship Council (CSC), S.G. by a NWO-VENI grant from the Netherlands Organization for Scientific Research (016.Veni.181.078). Moreover, we thank Xueyang Sun for the help of extracting DNA of protists strains and prof. Zhong Wei for providing the soil from China. We appreciate Dr. Xuankun Li (Gainesville) for comments and suggestions on the paper. We appreciate Dr. Ilya Grigoriev and Biology Imaging Center (Utrecht University, the Netherlands) for the help of taking protist images and videos.
Funding Information:
Z.G. was supported by Chinese Scholarship Council (CSC), S.G. by a NWO-VENI grant from the Netherlands Organization for Scientific Research (016.Veni.181.078). Moreover, we thank Xueyang Sun for the help of extracting DNA of protists strains and prof. Zhong Wei for providing the soil from China. We appreciate Dr. Xuankun Li (Gainesville) for comments and suggestions on the paper. We appreciate Dr. Ilya Grigoriev and Biology Imaging Center (Utrecht University, the Netherlands) for the help of taking protist images and videos.
Publisher Copyright:
© 2022 The Author(s)
Keywords
- 18S rRNA gene
- Allovahlkampfia
- Heterolobosea
- ITS region
- Vahlkampfia bulbosis n.sp.