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FAIR data for optical tweezers experiments

  • Matthew T J Halma
  • , Sowmiyaa Kumar
  • , Jan van Eck
  • , Sanne Abeln
  • , Alexander Gates*
  • , Gijs J L Wuite*
  • *Corresponding author for this work
  • Utrecht University
  • University of Antwerp
  • extern
  • University of Virginia

Research output: Contribution to journalArticleAcademicpeer-review

Abstract

The single-molecule biophysics community has delivered significant impacts to our understanding of fundamental biological processes, yet the field is also siloed and has fragmented data structures, which impede data sharing and limit the ability to conduct comprehensive meta-analyses. To advance the field of optical tweezers in single-molecule biophysics, it is important that the field adopts open and collaborative data sharing that facilitate meta-analyses that combine diverse resources and supports more advanced analyses, akin to those seen in projects such as the Protein Data Bank and the 1000 Genomes Project. Here, we assess the state of data findability, accessibility, interoperability, and reusability (the FAIR principles) within the single-molecule optical tweezers field. By combining a qualitative review with quantitative tools from bibliometrics, our analysis suggests that the field has significant room for improvement in terms of FAIR adherence. Finally, we discuss the potential of compulsory data deposition and a minimal set of metadata standards to ensure reproducibility and interoperability between systems. While implementing these measures may not be straightforward, they are key steps that will enhance the integration of optical tweezers biophysics with the broader biomedical literature.

Original languageEnglish
Pages (from-to)1255-1272
Number of pages18
JournalBiophysical Journal
Volume124
Issue number8
DOIs
Publication statusPublished - 15 Apr 2025
Externally publishedYes

Bibliographical note

Publisher Copyright:
© 2025 The Authors

Funding

This work is supported by European Union H2020 Marie-Sklowdowska Curie International Training Network AntiHelix ( 859853 ).

FundersFunder number
European Union H2020 Marie-Sklowdowska Curie International Training Network AntiHelix859853

    Keywords

    • Information Dissemination
    • Optical Tweezers

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