Domain-specific Design of Patient Classification in Cancer-Related Cachexia Research

Alexander Wickert; A.L. Lamprecht; Tiziana Margaria

doi:10.1145/3193992.3194002

Domain-specific Design of Patient Classification in Cancer-Related Cachexia Research

Alexander Wickert
, A.L. Lamprecht
, Tiziana Margaria

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

Abstract

We apply an IDE for user-level process design and composition to a real-life case study: a complex workflow from an ongoing global cancer-related cachexia research project. Originally buried in a manually operated spreadsheet, the process is now fully automated and integrated into the project database, ensuring the immediate availability, consistency and reproducibility of the outcomes. Our integrated solution enables the scientists to immediately execute the processes and easily customize both processes and data model to continuously changing experimental setups. The data modeling is provided by the Dynamic Web Application framework and the process modeling functionalities by the Java Application Building Center, both following the paradigm of eXtreme Model-Driven Design for model-driven software development.

Original language	English
Title of host publication	FormaliSE '18: Proceedings of the 6th Conference on Formal Methods in Software Engineering
Publisher	Association for Computing Machinery
Pages	60-63
Number of pages	4
ISBN (Print)	978-1-4503-5718-0
DOIs	https://doi.org/10.1145/3193992.3194002
Publication status	Published - 2 Jun 2018
Event	International Conference on Formal Methods in Software Engineering - Gothenburg, Sweden Duration: 2 Jun 2018 → …

Conference

Conference	International Conference on Formal Methods in Software Engineering
Abbreviated title	FormaliSE
Country/Territory	Sweden
City	Gothenburg
Period	2/06/18 → …

Keywords

scientific workflows
workflow design
process modeling
domainspecificmodeling
model-driven software development

UN SDGs

This output contributes to the following UN Sustainable Development Goals (SDGs)

Access to Document

10.1145/3193992.3194002

p60-wickertFinal published version, 273 KBLicence: Taverne

Cite this

@inproceedings{6c63365b52844828b0f8e4358649322a,

title = "Domain-specific Design of Patient Classification in Cancer-Related Cachexia Research",

abstract = "We apply an IDE for user-level process design and composition to a real-life case study: a complex workflow from an ongoing global cancer-related cachexia research project. Originally buried in a manually operated spreadsheet, the process is now fully automated and integrated into the project database, ensuring the immediate availability, consistency and reproducibility of the outcomes. Our integrated solution enables the scientists to immediately execute the processes and easily customize both processes and data model to continuously changing experimental setups. The data modeling is provided by the Dynamic Web Application framework and the process modeling functionalities by the Java Application Building Center, both following the paradigm of eXtreme Model-Driven Design for model-driven software development.",

keywords = "scientific workflows, workflow design, process modeling, domainspecificmodeling, model-driven software development",

author = "Alexander Wickert and A.L. Lamprecht and Tiziana Margaria",

year = "2018",

month = jun,

day = "2",

doi = "10.1145/3193992.3194002",

language = "English",

isbn = "978-1-4503-5718-0",

pages = "60--63",

booktitle = "FormaliSE '18: Proceedings of the 6th Conference on Formal Methods in Software Engineering",

publisher = "Association for Computing Machinery",

note = " International Conference on Formal Methods in Software Engineering, FormaliSE ; Conference date: 02-06-2018",

}

Wickert, A, Lamprecht, AL & Margaria, T 2018, Domain-specific Design of Patient Classification in Cancer-Related Cachexia Research. in FormaliSE '18: Proceedings of the 6th Conference on Formal Methods in Software Engineering. Association for Computing Machinery, pp. 60-63, International Conference on Formal Methods in Software Engineering, Gothenburg, Sweden, 2/06/18. https://doi.org/10.1145/3193992.3194002

Domain-specific Design of Patient Classification in Cancer-Related Cachexia Research. / Wickert, Alexander; Lamprecht, A.L.; Margaria, Tiziana.
FormaliSE '18: Proceedings of the 6th Conference on Formal Methods in Software Engineering. Association for Computing Machinery, 2018. p. 60-63.

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

TY - GEN

T1 - Domain-specific Design of Patient Classification in Cancer-Related Cachexia Research

AU - Wickert, Alexander

AU - Lamprecht, A.L.

AU - Margaria, Tiziana

PY - 2018/6/2

Y1 - 2018/6/2

N2 - We apply an IDE for user-level process design and composition to a real-life case study: a complex workflow from an ongoing global cancer-related cachexia research project. Originally buried in a manually operated spreadsheet, the process is now fully automated and integrated into the project database, ensuring the immediate availability, consistency and reproducibility of the outcomes. Our integrated solution enables the scientists to immediately execute the processes and easily customize both processes and data model to continuously changing experimental setups. The data modeling is provided by the Dynamic Web Application framework and the process modeling functionalities by the Java Application Building Center, both following the paradigm of eXtreme Model-Driven Design for model-driven software development.

AB - We apply an IDE for user-level process design and composition to a real-life case study: a complex workflow from an ongoing global cancer-related cachexia research project. Originally buried in a manually operated spreadsheet, the process is now fully automated and integrated into the project database, ensuring the immediate availability, consistency and reproducibility of the outcomes. Our integrated solution enables the scientists to immediately execute the processes and easily customize both processes and data model to continuously changing experimental setups. The data modeling is provided by the Dynamic Web Application framework and the process modeling functionalities by the Java Application Building Center, both following the paradigm of eXtreme Model-Driven Design for model-driven software development.

KW - scientific workflows

KW - workflow design

KW - process modeling

KW - domainspecificmodeling

KW - model-driven software development

U2 - 10.1145/3193992.3194002

DO - 10.1145/3193992.3194002

M3 - Conference contribution

SN - 978-1-4503-5718-0

SP - 60

EP - 63

BT - FormaliSE '18: Proceedings of the 6th Conference on Formal Methods in Software Engineering

PB - Association for Computing Machinery

T2 - International Conference on Formal Methods in Software Engineering

Y2 - 2 June 2018

ER -

Domain-specific Design of Patient Classification in Cancer-Related Cachexia Research

Abstract

Conference

Keywords

UN SDGs

Access to Document

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Cite this