Do NOE distances contain enough information to assess the relative populations of multi-conformer structures?

Alexandre Bonvin, A.T. Brünger

Research output: Contribution to journalArticleAcademicpeer-review

Abstract

The feasibility of determining the relative populations of multi-conformer structures from NOE-derived distances alone is assessed. Without cross-validation of the NOE restraints, any population ratio can be refined to a similar quality of the fit. Complete cross-validation provides a less biased measure of fit and allows the estimation of the correct population ratio when used in conjunction with very tight distance restraints. With the qualitative distance restraints most commonly used in NMR structure determination, cross-validation is unsuccessful in providing the correct answer. Other experimental sources are therefore needed to determine relative populations of multi-conformer structures.
Original languageEnglish
Pages (from-to)72-76
Number of pages5
JournalJournal of Biomolecular NMR
Volume7
Issue number1
Publication statusPublished - 1 Jan 1996
Externally publishedYes

Keywords

  • allergen
  • group 5 allergens, Ambrosia
  • plant protein
  • article
  • chemical structure
  • chemistry
  • conformation
  • methodology
  • nuclear magnetic resonance spectroscopy
  • pollen
  • probability
  • protein conformation
  • reproducibility

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