Description of Asgardarchaeum abyssi gen. nov. spec. nov., a novel species within the class Asgardarchaeia and phylum Asgardarchaeota in accordance with the SeqCode

  • Daniel Tamarit
  • , Stephan Köstlbacher
  • , Kathryn E. Appler
  • , Kassiani Panagiotou
  • , Valerie De Anda
  • , Christian Rinke
  • , Brett J. Baker
  • , Thijs J.G. Ettema*
  • *Corresponding author for this work

Research output: Contribution to journalArticleAcademicpeer-review

Abstract

Asgardarchaeota, commonly referred to as Asgard archaea, is a candidatus phylum-rank archaeal clade that includes the closest archaeal relatives of eukaryotes. Despite their prevalence in the scientific literature, the name Asgardarchaeota lacks nomenclatural validation. Here, we describe a novel high-quality metagenome-assembled genome (MAG), AB3033_2TS, proposed to serve as the nomenclatural type for the species Asgardarchaeum abyssiTS according to the rules of the SeqCode. Based on protein content and compositional features, we infer that A. abyssi AB3033_2TS is an acetogenic chemoheterotroph, possibly a facultative lithoautotroph, and is adapted to a thermophilic lifestyle. Utilizing genomes from Asgard archaea, TACK, and Euryarchaea, we perform phylogenomic reconstructions using the GTDB archaeal marker genes, the current reference set for taxonomic classification. Calibrating relative evolutionary divergence (RED) values for Asgardarchaeota using established Thermoproteota lineages in the GTDB r207 reference tree, we establish a robust classification and propose Asgardarchaeum as the type genus for the family Asgardarchaeaceae (fam. nov)., the order Asgardarchaeales (ord. nov.), the class Asgardarchaeia (class. nov.), and the phylum Asgardarchaeota (phyl. nov.). This effort aims to preserve taxonomic congruence in the scientific literature.

Original languageEnglish
Article number126525
Number of pages9
JournalSystematic and Applied Microbiology
Volume47
Issue number4
DOIs
Publication statusPublished - Jul 2024

Bibliographical note

Publisher Copyright:
© 2024 The Author(s)

Funding

We would like to thank Laura Eme for discussions on Asgard archaeal taxonomy, and Kiley Seitz and Maggie Langwig for their help in DNA extraction and binning. This work was supported by grants of the European Research Council (ERC Consolidator grant 817834), the Dutch Research Council (NWO-VICI grant VI.C.192.016), and the Volkswagen Foundation (grant 96725) (awarded to T.J.G.E.), and by a Moore-Simons Project on the Origin of the Eukaryotic Cell, Simons Foundation grant 73592LPI (https://doi.org/10.46714/735925LPI) (awarded to T.J.G.E. and B.J.B.) and Simons Foundation investigator award LI-SIAME-00002001 (awarded to B.J.B.). This work made use of the Dutch national e-infrastructure with the support of the SURF Cooperative using grant no. EINF-2953.

FundersFunder number
European Research Council (ERC Consolidator Grant)817834
Dutch Research Council (NWO-VICI)VI.C.192.016
Volkswagen Foundation96725
Moore-Simons Project on the Origin of the Eukaryotic Cell, Simons Foundation73592LPI
Simons Foundation investigator awardLI-SIAME-00002001
SURF CooperativeEINF-2953

    Keywords

    • Archaeal taxonomy
    • Asgardarchaeia
    • Asgardarchaeota
    • Asgardarchaeum
    • SeqCode

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