An Open Resource for Non-human Primate Imaging

PRIMatE Data Exchange (PRIME-DE) Global Collaboration Workshop and Consortium. Electronic address: michael.milham@childmind.org

doi:10.1016/j.neuron.2018.08.039

An Open Resource for Non-human Primate Imaging

PRIMatE Data Exchange (PRIME-DE) Global Collaboration Workshop and Consortium. Electronic address: [email protected]

Sub Physical Oceanography

Child Mind Institute, Inc.
Groupe d’Analyse et de Théorie Economique, CNRS and University of Lumiere Lyon 2, Lyon, France
NIHR-Newcastle Biomedical Research Centre in Ageing and Long-Term Conditions, Newcastle upon Tyne Hospitals NHS Foundation Trust and Newcastle University, Newcastle upon Tyne, UK.
Icahn Institute for Genomics and Multiscale Biology, Icahn School of Medicine at Mount Sinai, New York, NY, USA.
Utrecht University, University Medical Center Utrecht and Rehabilitation Center
Institut de Neurosciences de la Timone
East China Normal University
Behavioural Science Institute, Radboud University Nijmegen, Netherlands ; Praktikon, Nijmegen Netherlands.
NeuroSpin Center, Commissariat à l'Energie Atomique, F91191 Gif-sur-Yvette, France
Western University
Oregon Health and Science University
The Rockefeller University
University of Dublin, New York University
Lyon Neuroscience Research Center, IMPACT(Integrative,Multisensory, Perception, Action and Cognition) team, Lyon, France
Institut des Sciences Cognitives - Marc Jeannerod
University of Minnesota Medical School
National Institute of Mental Health
Department of Biology, Stanford University, Stanford, CA 94305, USA; Department of Plant Biology, Carnegie Institution for Science, Stanford, CA 94305, USA; Department of Molecular Biology, Princeton University, Princeton, NJ 08544, USA. Electronic address: [email protected].
Royal Netherlands Academy of Arts and Sciences
extern
Andrews University
Kennedy Institute - National Eye Clinic
Stockholm Heart Center Stockholm
Department of Physiology, Anatomy and Genetics, University of Oxford, Oxford, UK; Institute of Technology, University of Tartu, Tartu, Estonia.
McGill University and Genome Quebec Innovation Centre
Wildlife Health Center, School of Veterinary Medicine, University of California, Davis, California.
McGovern Institute for Brain Research
University of Amsterdam, VU University Amsterdam

Research output: Contribution to journal › Article › Academic › peer-review

Abstract

Non-human primate neuroimaging is a rapidly growing area of research that promises to transform and scale translational and cross-species comparative neuroscience. Unfortunately, the technological and methodological advances of the past two decades have outpaced the accrual of data, which is particularly challenging given the relatively few centers that have the necessary facilities and capabilities. The PRIMatE Data Exchange (PRIME-DE) addresses this challenge by aggregating independently acquired non-human primate magnetic resonance imaging (MRI) datasets and openly sharing them via the International Neuroimaging Data-sharing Initiative (INDI). Here, we present the rationale, design, and procedures for the PRIME-DE consortium, as well as the initial release, consisting of 25 independent data collections aggregated across 22 sites (total = 217 non-human primates). We also outline the unique pitfalls and challenges that should be considered in the analysis of non-human primate MRI datasets, including providing automated quality assessment of the contributed datasets.

Original language	English
Pages (from-to)	61-74.e2
Journal	Neuron
Volume	100
Issue number	1
DOIs	https://doi.org/10.1016/j.neuron.2018.08.039
Publication status	Published - 10 Oct 2018

Bibliographical note

Keywords

Animals
Brain/anatomy & histology
Connectome/methods
Datasets as Topic
Information Dissemination/methods
Magnetic Resonance Imaging
Neuroimaging
Primates

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10.1016/j.neuron.2018.08.039Licence: CC BY

Cite this

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title = "An Open Resource for Non-human Primate Imaging",

abstract = "Non-human primate neuroimaging is a rapidly growing area of research that promises to transform and scale translational and cross-species comparative neuroscience. Unfortunately, the technological and methodological advances of the past two decades have outpaced the accrual of data, which is particularly challenging given the relatively few centers that have the necessary facilities and capabilities. The PRIMatE Data Exchange (PRIME-DE) addresses this challenge by aggregating independently acquired non-human primate magnetic resonance imaging (MRI) datasets and openly sharing them via the International Neuroimaging Data-sharing Initiative (INDI). Here, we present the rationale, design, and procedures for the PRIME-DE consortium, as well as the initial release, consisting of 25 independent data collections aggregated across 22 sites (total = 217 non-human primates). We also outline the unique pitfalls and challenges that should be considered in the analysis of non-human primate MRI datasets, including providing automated quality assessment of the contributed datasets.",

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doi = "10.1016/j.neuron.2018.08.039",

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AU - Milham, Michael P

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AU - Koo, Bonhwang

AU - Xu, Ting

AU - Amiez, Céline

AU - Balezeau, Fabien

AU - Baxter, Mark G

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AU - Froudist-Walsh, Sean

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AU - Kastner, Sabine

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AU - Leopold, David A

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AU - Messinger, Adam

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AU - Pinsk, Mark

AU - Poirier, Colline

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KW - Connectome/methods

KW - Datasets as Topic

KW - Information Dissemination/methods

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KW - Neuroimaging

KW - Primates

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DO - 10.1016/j.neuron.2018.08.039

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SN - 0896-6273

VL - 100

SP - 61-74.e2

JO - Neuron

JF - Neuron

IS - 1

ER -

An Open Resource for Non-human Primate Imaging

Abstract

Bibliographical note

Keywords

Access to Document

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Cite this