Allele frequencies and diversity parameters of 27 single nucleotide polymorphisms within and across goat breeds

I. Cappuccio; L. Pariset; P. Ajmone-Marsan; S. Dunner; O. Cortes; G. Erhardt; G. Lühken; K. Gutscher; S. Joost; I. J. Nijman; J. A. Lenstra; P. R. England; S. Zundel; G. Obexer-Ruff; A. Beja-Pereira; A. Valentini

doi:10.1111/j.1471-8286.2006.01425.x

Allele frequencies and diversity parameters of 27 single nucleotide polymorphisms within and across goat breeds

I. Cappuccio
, L. Pariset^*
, P. Ajmone-Marsan
, S. Dunner
, O. Cortes
, G. Erhardt
, G. Lühken
, K. Gutscher
, S. Joost
, I. J. Nijman
, J. A. Lenstra
, P. R. England
, S. Zundel
, G. Obexer-Ruff
, A. Beja-Pereira
, A. Valentini

^*Corresponding author for this work

Veterinary Medicine

École polytechnique
University of Porto
Utrecht University
Dipartimento di Produzioni Animali
Tuscia University
Istituto di Zootecnica and BioDNA Research Centre
Catholic University of the Sacred Heart
Institut für Tierzucht und Haustiergenetik
Justus Liebig University Giessen
Laboratoire d'Ecologie Alpine (LECA)
Universite Joseph Fourier
Institute for Farm Animal Genetics
Berne University
Departimento de Producción Animal
Universidad Autónoma de Madrid
CIBIO-University of Porto
Campus Agrario de Vairão

Research output: Contribution to journal › Article › Academic › peer-review

Abstract

Single-nucleotide polymorphisms (SNPs) are useful markers for biodiversity assessment, linkage analysis, traceability and paternity testing. To date, there are no available SNPs for goat in the NCBI dbSNP database and only a few are reported in the literature. Within the European Union Econogene project, we characterized 27 SNPs in goats using a targeted-gene approach. Polymorphisms were identified in a panel of 16 unrelated individuals belonging to eight different goat breeds selected throughout Europe. Genotypes of 30 goats from each of the eight breeds were determined for all the SNPs characterized and diversity measures were estimated. The caprine SNPs described will be a useful complement to the available genome markers.

Original language	English
Pages (from-to)	992-997
Number of pages	6
Journal	Molecular Ecology Notes
Volume	6
Issue number	4
DOIs	https://doi.org/10.1111/j.1471-8286.2006.01425.x
Publication status	Published - 1 Dec 2006

Keywords

Gene diversity
Goat
Selection
Single-nucleotide polymorphisms

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10.1111/j.1471-8286.2006.01425.x

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Cappuccio, I., Pariset, L., Ajmone-Marsan, P., Dunner, S., Cortes, O., Erhardt, G., Lühken, G., Gutscher, K., Joost, S., Nijman, I. J., Lenstra, J. A., England, P. R., Zundel, S., Obexer-Ruff, G., Beja-Pereira, A., & Valentini, A. (2006). Allele frequencies and diversity parameters of 27 single nucleotide polymorphisms within and across goat breeds. Molecular Ecology Notes, 6(4), 992-997. https://doi.org/10.1111/j.1471-8286.2006.01425.x

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abstract = "Single-nucleotide polymorphisms (SNPs) are useful markers for biodiversity assessment, linkage analysis, traceability and paternity testing. To date, there are no available SNPs for goat in the NCBI dbSNP database and only a few are reported in the literature. Within the European Union Econogene project, we characterized 27 SNPs in goats using a targeted-gene approach. Polymorphisms were identified in a panel of 16 unrelated individuals belonging to eight different goat breeds selected throughout Europe. Genotypes of 30 goats from each of the eight breeds were determined for all the SNPs characterized and diversity measures were estimated. The caprine SNPs described will be a useful complement to the available genome markers.",

keywords = "Gene diversity, Goat, Selection, Single-nucleotide polymorphisms",

author = "I. Cappuccio and L. Pariset and P. Ajmone-Marsan and S. Dunner and O. Cortes and G. Erhardt and G. L{\"u}hken and K. Gutscher and S. Joost and Nijman, \{I. J.\} and Lenstra, \{J. A.\} and England, \{P. R.\} and S. Zundel and G. Obexer-Ruff and A. Beja-Pereira and A. Valentini",

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doi = "10.1111/j.1471-8286.2006.01425.x",

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Cappuccio, I, Pariset, L, Ajmone-Marsan, P, Dunner, S, Cortes, O, Erhardt, G, Lühken, G, Gutscher, K, Joost, S, Nijman, IJ, Lenstra, JA, England, PR, Zundel, S, Obexer-Ruff, G, Beja-Pereira, A & Valentini, A 2006, 'Allele frequencies and diversity parameters of 27 single nucleotide polymorphisms within and across goat breeds', Molecular Ecology Notes, vol. 6, no. 4, pp. 992-997. https://doi.org/10.1111/j.1471-8286.2006.01425.x

TY - JOUR

T1 - Allele frequencies and diversity parameters of 27 single nucleotide polymorphisms within and across goat breeds

AU - Cappuccio, I.

AU - Pariset, L.

AU - Ajmone-Marsan, P.

AU - Dunner, S.

AU - Cortes, O.

AU - Erhardt, G.

AU - Lühken, G.

AU - Gutscher, K.

AU - Joost, S.

AU - Nijman, I. J.

AU - Lenstra, J. A.

AU - England, P. R.

AU - Zundel, S.

AU - Obexer-Ruff, G.

AU - Beja-Pereira, A.

AU - Valentini, A.

PY - 2006/12/1

Y1 - 2006/12/1

N2 - Single-nucleotide polymorphisms (SNPs) are useful markers for biodiversity assessment, linkage analysis, traceability and paternity testing. To date, there are no available SNPs for goat in the NCBI dbSNP database and only a few are reported in the literature. Within the European Union Econogene project, we characterized 27 SNPs in goats using a targeted-gene approach. Polymorphisms were identified in a panel of 16 unrelated individuals belonging to eight different goat breeds selected throughout Europe. Genotypes of 30 goats from each of the eight breeds were determined for all the SNPs characterized and diversity measures were estimated. The caprine SNPs described will be a useful complement to the available genome markers.

AB - Single-nucleotide polymorphisms (SNPs) are useful markers for biodiversity assessment, linkage analysis, traceability and paternity testing. To date, there are no available SNPs for goat in the NCBI dbSNP database and only a few are reported in the literature. Within the European Union Econogene project, we characterized 27 SNPs in goats using a targeted-gene approach. Polymorphisms were identified in a panel of 16 unrelated individuals belonging to eight different goat breeds selected throughout Europe. Genotypes of 30 goats from each of the eight breeds were determined for all the SNPs characterized and diversity measures were estimated. The caprine SNPs described will be a useful complement to the available genome markers.

KW - Gene diversity

KW - Goat

KW - Selection

KW - Single-nucleotide polymorphisms

UR - https://www.scopus.com/pages/publications/33751336143

U2 - 10.1111/j.1471-8286.2006.01425.x

DO - 10.1111/j.1471-8286.2006.01425.x

M3 - Article

AN - SCOPUS:33751336143

SN - 1471-8278

VL - 6

SP - 992

EP - 997

JO - Molecular Ecology Notes

JF - Molecular Ecology Notes

IS - 4

ER -

Allele frequencies and diversity parameters of 27 single nucleotide polymorphisms within and across goat breeds

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Keywords

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