Sub Bioinformatics

UN Sustainable Development Goals

In 2015, UN member states agreed to 17 global Sustainable Development Goals (SDGs) to end poverty, protect the planet and ensure prosperity for all. Our work contributes towards the following SDG(s):

Ruben Bakker
- Faculty of Science, Sub Bioinformatics - Lecturer
Person: Guest, Contract or Emeritus
Sibbe Bakker
- Faculty of Science, Sub Bioinformatics - Research and Education Assistant
Person: Support staff
Vivek Bhardwaj
- Faculty of Science, Sub Bioinformatics - Assistant Professor
Person: Assistant Professor
Janne Bibbe, MSc
- Faculty of Science, Sub Bioinformatics - PhD Candidate
Person: PhD Candidate
Meine Boer, MSc
- m.d.boeruunl
- Faculty of Science, Sub Bioinformatics - PhD Candidate
Person: Guest, Contract or Emeritus

A corpus of GA4GH phenopackets: Case-level phenotyping for genomic diagnostics and discovery
Danis, D., Bamshad, M. J., Bridges, Y., Caballero-Oteyza, A., Cacheiro, P., Carmody, L. C., Chimirri, L., Chong, J. X., Coleman, B., Dalgleish, R., Freeman, P. J., Graefe, A. S. L., Groza, T., Hansen, P., Jacobsen, J. O. B., Klocperk, A., Kusters, M., Ladewig, M. S., Marcello, A. J. & Mattina, T. & 15 others, Mungall, C. J., Munoz-Torres, M. C., Reese, J. T., Rehburg, F., Reis, B. C. S., Schuetz, C., Smedley, D., Strauss, T., Sundaramurthi, J. C., Thun, S., Wissink, K., Wagstaff, J. F., Zocche, D., Haendel, M. A. & Robinson, P. N., 9 Jan 2025, In: Human Genetics and Genomics Advances. 6, 1, p. 1-7 7 p., 100371.
Research output: Contribution to journal › Article › Academic › peer-review

Open Access
File
Correction to: Examining the healthy human microbiome concept (Nature Reviews Microbiology, (2024), 10.1038/s41579-024-01107-0)
Human Microbiome Action Consortium, Joos, R., Boucher, K., Lavelle, A., Arumugam, M., Blaser, M. J., Claesson, M. J., Clarke, G., Cotter, P. D., De Sordi, L., Dominguez-Bello, M. G., Dutilh, B. E., Ehrlich, S. D., Ghosh, T. S., Hill, C., Junot, C., Lahti, L., Lawley, T. D., Licht, T. R. & Maguin, E. & 31 others, Makhalanyane, T. P., Marchesi, J. R., Matthijnssens, J., Raes, J., Ravel, J., Salonen, A., Scanlan, P. D., Shkoporov, A., Stanton, C., Thiele, I., Tolstoy, I., Walter, J., Yang, B., Yutin, N., Zhernakova, A., Zwart, H., Derosa, L., Zitvogel, L., Veiga, P., Vecchi, C., Trebicka, J., Serra, D., Segata, N., Schierwagen, R., Sarati, A., Rodriguez, J., Rhimi, M., Ravaud, P., Prost, P. L., Pons, N. & Pinto, F., 2025, In: Nature Reviews Microbiology. 23, 206.
Research output: Contribution to journal › Comment/Letter to the editor › Academic › peer-review
Discovering Hidden Archaeal and Bacterial Lipid Producers in a Euxinic Marine System
Boukhchtaber, D. C., von Meijenfeldt, F. A. B., Sahonero Canavesi, D. X., Dorhout, D., Bale, N. J., Hopmans, E. C. & Villanueva, L., Mar 2025, In: Environmental Microbiology. 27, 3, e70054.
Research output: Contribution to journal › Article › Academic › peer-review

Open Access
File
Examining the healthy human microbiome concept
Human Microbiome Action Consortium, Joos, R., Boucher, K., Lavelle, A., Arumugam, M., Blaser, M. J., Claesson, M. J., Clarke, G., Cotter, P. D., De Sordi, L., Dominguez-Bello, M. G., Dutilh, B. E., Ehrlich, S. D., Ghosh, T. S., Hill, C., Junot, C., Lahti, L., Lawley, T. D., Licht, T. R. & Maguin, E. & 31 others, Makhalanyane, T. P., Marchesi, J. R., Matthijnssens, J., Raes, J., Ravel, J., Salonen, A., Scanlan, P. D., Shkoporov, A., Stanton, C., Thiele, I., Tolstoy, I., Walter, J., Yang, B., Yutin, N., Zhernakova, A., Zwart, H., Derosa, L., Zitvogel, L., Veiga, P., Vecchi, C., Trebicka, J., Serra, D., Segata, N., Schierwagen, R., Sarati, A., Rodriquez, J., Rhimi, M., Ravaud, P., Prost, P. L., Pons, N. & Pinto, F., 2025, In: Nature Reviews Microbiology. 23, p. 192–205
Research output: Contribution to journal › Article › Academic › peer-review
Expansion of maltose/sucrose related transporters in Ascomycetes and their association with corresponding disaccharide utilization
Xu, L., Manassero, A., Snel, B., de Vries, R. P. & Peng, M., Jan 2025, In: Current Research in Microbial Sciences. 8, 100368.
Research output: Contribution to journal › Article › Academic › peer-review

Open Access
File

3 Publication peer-review
2 Membership of committee
1 Consultancy

Danish Council for Independent Research (External organisation)
Zomer, A. (Member)
2015
Activity: Membership › Membership of committee › Academic
PLoS Genetics (Journal)
Zomer, A. (Peer reviewer)
2015
Activity: Publication peer-review and editorial work › Publication peer-review › Academic
World Health Organization (External organisation)
Zomer, A. (Chair)
1 Jan 2015 → 1 Jan 2019
Activity: Membership › Membership of committee › Professional
PLoS Computational Biology (Journal)
Zomer, A. (Peer reviewer)
2014 → 2015
Activity: Publication peer-review and editorial work › Publication peer-review › Academic
BMC Microbiology [E] (Journal)
Zomer, A. (Peer reviewer)
2014 → 2015
Activity: Publication peer-review and editorial work › Publication peer-review › Academic

Clarivate Higly-cited Researcher: Cross-field domain
Dutilh, B. (Recipient), 2019
Prize: Prize (including medals and awards)
Clarivate Higly-cited Researcher: Cross-field domain
Dutilh, B. (Recipient), 2018
Prize: Prize (including medals and awards)
ERC Consolidator Grant 2019
Dutilh, B. E. (Recipient), 2019
Prize: Fellowship awarded competitively
NWO-Veni award: Deconstructing the super-organism: detecting metabolic differentiation by compartmentalizing metagenomes
Dutilh, B. (Recipient), 2010
Prize: Fellowship awarded competitively
NWO-Vici award 2015
Snel, B. (Recipient), 2015
Prize: Fellowship awarded competitively

Sub Bioinformatics

UN Sustainable Development Goals

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Publication network from the last five years

Dive into details

Ruben Bakker

Sibbe Bakker

Vivek Bhardwaj

Janne Bibbe, MSc

Meine Boer, MSc

A corpus of GA4GH phenopackets: Case-level phenotyping for genomic diagnostics and discovery

Correction to: Examining the healthy human microbiome concept (Nature Reviews Microbiology, (2024), 10.1038/s41579-024-01107-0)

Discovering Hidden Archaeal and Bacterial Lipid Producers in a Euxinic Marine System

Examining the healthy human microbiome concept

Expansion of maltose/sucrose related transporters in Ascomycetes and their association with corresponding disaccharide utilization

Danish Council for Independent Research (External organisation)

PLoS Genetics (Journal)

World Health Organization (External organisation)

PLoS Computational Biology (Journal)

BMC Microbiology [E] (Journal)

Clarivate Higly-cited Researcher: Cross-field domain

Clarivate Higly-cited Researcher: Cross-field domain

ERC Consolidator Grant 2019

NWO-Veni award: Deconstructing the super-organism: detecting metabolic differentiation by compartmentalizing metagenomes

NWO-Vici award 2015

Sub Bioinformatics

UN Sustainable Development Goals

Fingerprint

Publication network from the last five years

Profiles

Research output

Activities

Prizes & Grants