Research output per year
Research output per year
- 1 - 50 out of 60 results
Search results
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2025
Acanthamoeba castellanii trophozoites need oxygen for normal functioning and lipids are their preferred substrate, offering new possibilities for treatment
Sarink, M. J., Mykytyn, A. Z., Jedidi, A., Houweling, M., Brouwers, J. F., Ruijter, G., Verbon, A., van Hellemond, J. J. & Tielens, A. G. M., Jan 2025, In: International Journal for Parasitology. 55, 1, p. 35-44 10 p.Research output: Contribution to journal › Article › Academic › peer-review
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Cellular crosstalk promotes hepatic progenitor cell proliferation and stellate cell activation in 3D co-culture
Haaker, M. W., Chang, J.-C., Chung, B. K., Pieper, T. S., Noé, F., Wang, T., Geijsen, N., Houweling, M., Wolfrum, C., Vaandrager, A. B., Melum, E., Spee, B. & Helms, J. B., 2025, In: Cellular and Molecular Gastroenterology and Hepatology. 19, 5, 101472.Research output: Contribution to journal › Article › Academic › peer-review
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Maternal exposure to purified versus grain-based diet during early lactation in mice affects offspring growth and reduces responsivity to Western-style diet challenge in adulthood
Rakhshandehroo, M., Harvey, L., de Bruin, A., Timmer, E., Lohr, J., Tims, S. & Schipper, L., 9 Jan 2025, In: Journal of Developmental Origins of Health and Disease. 16, e3.Research output: Contribution to journal › Article › Academic › peer-review
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Metabolic profiling of patient-derived organoids reveals nucleotide synthesis as a metabolic vulnerability in malignant rhabdoid tumors
Kes, M. M. G., Morales-Rodriguez, F., Zaal, E. A., de Souza, T., Proost, N., van de Ven, M., van den Heuvel-Eibrink, M. M., Jansen, J. W. A., Berkers, C. R. & Drost, J., 21 Jan 2025, In: Cell Reports Medicine. 6, 1, 101878.Research output: Contribution to journal › Article › Academic › peer-review
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Rationally designed peptides inhibit the formation of α-synuclein fibrils and oligomers
Ali, T. T., Merghani, M., Al-Azzani, M., Gatzemeier, L. M., Hoppert, M., Kaloyanova, D., Outeiro, T. F., Neumann, P., Popova, B. & Braus, G. H., 5 May 2025, In: European Journal of Medicinal Chemistry. 289, 14 p., 117452.Research output: Contribution to journal › Article › Academic › peer-review
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SMC Abca1 and Abcg1 Deficiency Enhances Urinary Bladder Distension but Not Atherosclerosis
Halmos, B., La Rose, A. M., Methorst, D., Groenen, A. G., Nakládal, D., Bazioti, V., Koster, M. H., Kloosterhuis, N. J., Buiten, A. V., Schouten, E. M., Huijkman, N. C. A., Langelaar-Makkinje, M., Bongiovanni, L., De Neck, S. M., de Bruin, A., Buikema, H., Deelman, L. E., van den Heuvel, M. C., Kuipers, F. & de Jong, I. J. & 4 others, , 28 Feb 2025, In: Circulation Research. 136, 5, p. 491-507 17 p.Research output: Contribution to journal › Article › Academic › peer-review
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Spherical harmonics texture extraction for versatile analysis of biological objects
Gros, O., Passmore, J. B., Borst, N. O., Kutra, D., Nijenhuis, W., Fuqua, T., Kapitein, L. C., Crocker, J. M., Kreshuk, A. & Köhler, S., Jan 2025, In: PLoS Computational Biology. 21, 1, 20 p., e1012349.Research output: Contribution to journal › Article › Academic › peer-review
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Stable Isotope Tracing Experiments Using LC-MS
Zaal, E. A., Jansen, J. W. A. & Berkers, C. R., 2025, In: Methods in molecular biology (Clifton, N.J.). 2855, p. 103-116 14 p.Research output: Contribution to journal › Article › Academic › peer-review
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Stochastic variation in the FOXM1 transcription program mediates replication stress tolerance
Segeren, H. A., Wierenga, K. A., Riemers, F. M., van Liere, E. A. & Westendorp, B., 26 Feb 2025, (E-pub ahead of print) In: Molecular Oncology.Research output: Contribution to journal › Article › Academic › peer-review
Open Access -
2024
AMPK activation induces RALDH+ tolerogenic dendritic cells by rewiring glucose and lipid metabolism
Brombacher, E. C., Patente, T. A., van der Ham, A. J., Moll, T. J. A., Otto, F., Verheijen, F. W. M., Zaal, E. A., de Ru, A. H., Tjokrodirijo, R. T. N., Berkers, C. R., van Veelen, P. A., Guigas, B. & Everts, B., 7 Oct 2024, In: The Journal of cell biology. 223, 10, e202401024.Research output: Contribution to journal › Article › Academic › peer-review
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APAVAC Immunotherapy for the Adjuvant Treatment of a Canine Mucosal Melanoma
Rinaldi, V., Bongiovanni, L., Crisi, P. E., Vignoli, M., Peli, R. E., Masci, S., Boari, A. & Finotello, R., 6 Dec 2024, In: Veterinary Sciences. 11, 12, 628.Research output: Contribution to journal › Article › Academic › peer-review
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A reverse brake for the cell cycle
Westendorp, B., 2 May 2024, In: Science (New York, N.Y.). 384, 6695, p. 512-513 2 p.Research output: Contribution to journal › Article › Academic › peer-review
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Arginine deprivation enriches lung cancer proteomes with cysteine by inducing arginine-to-cysteine substitutants
Yang, C., Pataskar, A., Feng, X., Montenegro Navarro, J., Paniagua, I., Jacobs, J. J. L., Zaal, E. A., Berkers, C. R., Bleijerveld, O. B. & Agami, R., 16 May 2024, In: Molecular Cell. 84, 10, p. 1904-1916.e7Research output: Contribution to journal › Article › Academic › peer-review
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Assessment of Kinome-wide Activity Remodeling Upon Picornavirus Infection
Veth, T. S., Nouwen, L. V., Zwaagstra, M., Lyoo, H., Wierenga, K. A., Westendorp, B., Altelaar, M. A. F. M., Berkers, C., van Kuppeveld, F. J. M. & Heck, A. J. R., May 2024, In: Molecular and Cellular Proteomics. 23, 5, 100757.Research output: Contribution to journal › Article › Academic › peer-review
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B-Flow and Contrast-Enhanced Ultrasound (CEUS) Features of Subcutaneous Masses and Nodular Lesions in Dogs
De Bonis, A., Simeoni, F., Paolini, A., Rosto, M., Del Signore, F., Bongiovanni, L., Bianchi, A., Tamburro, R. & Vignoli, M., 21 Oct 2024, In: Veterinary Sciences. 11, 10, 12 p., 516.Research output: Contribution to journal › Article › Academic › peer-review
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Cannabinoid receptor-2 expression in canine multicentric diffuse large B-cell lymphoma: An immunohistochemical, digital pathology and clinical analysis
Rinaldi, V., Ressel, L., Bongiovanni, L., Crisi, P. E., Boari, A., Killick, D., Chiocchetti, R. & Finotello, R., Nov 2024, In: Research in Veterinary Science. 180, 6 p., 105411.Research output: Contribution to journal › Article › Academic › peer-review
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Changes in bile acid composition are correlated with reduced intestinal cholesterol uptake in intestine-specific WASH-deficient mice
Heida, A., van Dijk, T., Smit, M., Koehorst, M., Koster, M., Kloosterhuis, N., Havinga, R., Bloks, V. W., Wolters, J. C., de Bruin, A., Kuivenhoven, J. A., de Boer, J. F., Kuipers, F. & van de Sluis, B., Mar 2024, In: Biochimica et Biophysica Acta - Molecular and Cell Biology of Lipids. 1869, 2, p. 1-11 11 p., 159445.Research output: Contribution to journal › Article › Academic › peer-review
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Early activation of hepatic stellate cells induces rapid initiation of retinyl ester breakdown while maintaining lecithin: Retinol acyltransferase (LRAT) activity
Haaker, M. W., Goossens, V., Hoogland, N. A. N., van Doorne, H., Wang, Z., Jansen, J. W. A., Kaloyanova, D. V., van de Lest, C. H. A., Houweling, M., Vaandrager, A. B. & Helms, J. B., Oct 2024, In: Biochimica et Biophysica Acta - Molecular and Cell Biology of Lipids. 1869, 7, 10 p., 159540.Research output: Contribution to journal › Article › Academic › peer-review
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ER stress inhibition enhances formation of triacylglcerols and protects endothelial cells from lipotoxicity
Kovacevic, I., Schmidt, P. H., Kowalski, A., Helms, B. J., Lest, C. H. A. V. D., Kluttig, A. & Posern, G., 3 Jun 2024, In: Cell Communication and Signaling. 22, 1, p. 1-21 21 p., 304.Research output: Contribution to journal › Article › Academic › peer-review
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Extracellular vesicles from seminal plasma interact with T cells in vitro and drive their differentiation into regulatory T-cells
Zhang, X., Greve, P. F., Minh, T. T. N., Wubbolts, R., Demir, A. Y., Zaal, E. A., Berkers, C. R., Boes, M. & Stoorvogel, W., Jul 2024, In: Journal of Extracellular Vesicles. 13, 7, p. 1-22 22 p., e12457.Research output: Contribution to journal › Article › Academic › peer-review
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Histomorphological evaluation of thermal injury following palatoplasty performed with CO 2 laser or LigaSure device in dogs with brachycephalic obstructive airway syndrome.
Tamburro, R., Bianchi, A., Paolini, A., Bongiovanni, L., Della Salda, L., Collivignarelli, F., Niebauer, G. W., Ceballos, J. L., Teofani, M. & Bussadori, R., Oct 2024, In: The Veterinary Journal. 307, 106195.Research output: Contribution to journal › Article › Academic › peer-review
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Immune suppression by human thymus-derived effector Tregs relies on glucose/lactate-fueled fatty acid synthesis
de Kivit, S., Mensink, M., Kostidis, S., Derks, R. J. E., Zaal, E. A., Heijink, M., Verleng, L. J., de Vries, E., Schrama, E., Blomberg, N., Berkers, C. R., Giera, M. & Borst, J., 24 Sept 2024, In: Cell Reports. 43, 9, 114681.Research output: Contribution to journal › Article › Academic › peer-review
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Intracellular localisation and extracellular release of Y RNA and Y RNA binding proteins
Driedonks, T. A. P., Ressel, S., Tran Ngoc Minh, T., Buck, A. H. & Nolte-‘t Hoen, E. N. M., Jan 2024, In: Journal of Extracellular Biology. 3, 1, 16 p., e123.Research output: Contribution to journal › Article › Academic › peer-review
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KCNJ16-depleted kidney organoids recapitulate tubulopathy and lipid recovery upon statins treatment
Sendino Garví, E., van Slobbe, G. J. J., Zaal, E. A., de Baaij, J. H. F., Hoenderop, J. G., Masereeuw, R., Janssen, M. J. & van Genderen, A. M., 26 Aug 2024, In: Stem cell research & therapy. 15, 1, 268.Research output: Contribution to journal › Article › Academic › peer-review
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Lipidome profiling of neutrophil-derived extracellular vesicles unveils their contribution to the ensemble of synovial fluid-derived extracellular vesicles during joint inflammation
Varela, L., Mol, S., Taanman-Kueter, E. W., Ryan, S. E., Taams, L. S., de Jong, E., van Weeren, P. R., van de Lest, C. H. A. & Wauben, M. H. M., Oct 2024, In: Biochimica et Biophysica Acta - Molecular and Cell Biology of Lipids. 1869, 7, 159534.Research output: Contribution to journal › Article › Academic › peer-review
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Loss of HD-PTP function results in lipodystrophy, defective cellular signaling, and altered lipid homeostasis
Schultz, D. F., Davies, B. A., Payne, J. A., Martin, C. P., Minard, A. Y., Childs, B. G., Zhang, C., Jeganathan, K. B., Sturmlechner, I., White, T. A., de Bruin, A., Harkema, L., Chen, H., Davies, M. A., Jachim, S., LeBrasseur, N. K., Piper, R. C., Li, H., Baker, D. J. & van Deursen, J. & 2 others, , Sept 2024, In: Journal of Cell Science. 137, 18, jcs262032.Research output: Contribution to journal › Article › Academic › peer-review
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Mesenchymal stromal/stem cells promote intestinal epithelium regeneration after chemotherapy-induced damage
Yetkin-Arik, B., Jansen, S. A., Varderidou-Minasian, S., Westendorp, B., Skarp, K.-P., Altelaar, M., Lindemans, C. A. & Lorenowicz, M. J., 29 Apr 2024, In: Stem cell research & therapy. 15, 1, 1 p., 125.Research output: Contribution to journal › Article › Academic › peer-review
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Minimal information for studies of extracellular vesicles (MISEV2023): From basic to advanced approaches
MISEV Consortium, Welsh, J. A., Goberdhan, D. C. I., O'Driscoll, L., Buzas, E. I., Blenkiron, C., Bussolati, B., Cai, H., Di Vizio, D., Driedonks, T. A. P., Erdbrügger, U., Falcon-Perez, J. M., Fu, Q.-L., Hill, A. F., Lenassi, M., Lim, S. K., Mahoney, M. G., Mohanty, S., Möller, A. & Nieuwland, R. & 30 others, , Feb 2024, In: Journal of Extracellular Vesicles. 13, 2, 84 p., e12404.Research output: Contribution to journal › Article › Academic › peer-review
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Modulation of nucleotide metabolism by picornaviruses
Nouwen, L. V., Breeuwsma, M., Zaal, E. A., van de Lest, C. H. A., Buitendijk, I., Zwaagstra, M., Balić, P., Filippov, D. V., Berkers, C. R. & van Kuppeveld, F. J. M., Mar 2024, In: PLoS Pathogens. 20, 3 March, e1012036.Research output: Contribution to journal › Article › Academic › peer-review
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MUC13 negatively regulates tight junction proteins and intestinal epithelial barrier integrity via Protein Kinase C
Segui-Perez, C., Stapels, D. A. C., Ma, Z., Su, J., Passchier, E., Westendorp, B., Wubbolts, R. W., Wu, W., van Putten, J. P. M. & Strijbis, K., Mar 2024, In: Journal of Cell Science. 137, 5Research output: Contribution to journal › Article › Academic › peer-review
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Oleic acid enhances proliferation and calcium mobilization of CD3/CD28 activated CD4+ T cells through incorporation into membrane lipids
von Hegedus, J. H., de Jong, A. J., Hoekstra, A. T., Spronsen, E., Zhu, W., Cabukusta, B., Kwekkeboom, J. C., Heijink, M., Bos, E., Berkers, C. R., Giera, M. A., Toes, R. E. M. & Ioan-Facsinay, A., Sept 2024, In: European Journal of Immunology. 54, 9, 2350685.Research output: Contribution to journal › Article › Academic › peer-review
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Opposite regulation of glycogen metabolism by cAMP produced in the cytosol and at the plasma membrane
Bizerra, P. F. V., Gilglioni, E. H., Li, H. L., Go, S., Oude Elferink, R. P. J., Verhoeven, A. J. & Chang, J. C., Jan 2024, In: Biochimica et Biophysica Acta - Molecular Cell Research. 1871, 1, 17 p., 119585.Research output: Contribution to journal › Article › Academic › peer-review
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Oral β-RA induces metabolic rewiring leading to the rescue of diet-induced obesity
Díaz-Casado, M. E., González-García, P., López-Herrador, S., Hidalgo-Gutiérrez, A., Jiménez-Sánchez, L., Barriocanal-Casado, E., Bakkali, M., van de Lest, C. H. A., Corral-Sarasa, J., Zaal, E. A., Berkers, C. R. & López, L. C., 1 Oct 2024, In: Biochimica et Biophysica Acta. Molecular Basis of Disease. 1870, 7, 14 p., 167283.Research output: Contribution to journal › Article › Academic › peer-review
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P53-dependent hypusination of eIF5A affects mitochondrial translation and senescence immune surveillance
Jiang, X., Baig, A. H., Palazzo, G., Del Pizzo, R., Bortecen, T., Groessl, S., Zaal, E. A., Amaya Ramirez, C. C., Kowar, A., Aviles-Huerta, D., Berkers, C. R., Palm, W., Tschaharganeh, D., Krijgsveld, J. & Loayza-Puch, F., 28 Aug 2024, In: Nature Communications. 15, 1, 16 p., 7458.Research output: Contribution to journal › Article › Academic › peer-review
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Postpartum development of metabolic dysfunction-associated steatotic liver disease in a lean mouse model of gestational diabetes mellitus
Hribar, K., Eichhorn, D., Bongiovanni, L., Koster, M. H., Kloosterhuis, N. J., de Bruin, A., Oosterveer, M. H., Kruit, J. K. & van der Beek, E. M., 25 Jun 2024, In: Scientific Reports. 14, 1, 11 p., 14621.Research output: Contribution to journal › Article › Academic › peer-review
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Proteome and phospholipidome interrelationship of synovial fluid-derived extracellular vesicles in equine osteoarthritis: An exploratory 'multi-omics' study to identify composite biomarkers
Clarke, E., Varela, L., Jenkins, R. E., Lozano-Andrés, E., Cywińska, A., Przewozny, M., van Weeren, P. R., van de Lest, C. H. A., Peffers, M. & Wauben, M. H. M., Mar 2024, In: Biochemistry and Biophysics Reports. 37, 15 p., 101635.Research output: Contribution to journal › Article › Academic › peer-review
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Pulmonary Thromboembolism and Myocarditis Resulting from a Large Pacing-Lead-Associated Right Ventricular Thrombus in a Dog with Chronic Cough as Presenting Sign
Szatmári, V. & Thomas, R., 24 May 2024, In: Veterinary Sciences. 11, 6, 18 p., 237.Research output: Contribution to journal › Article › Academic › peer-review
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S-adenosylmethionine biosynthesis is a targetable metabolic vulnerability in multiple myeloma
Wang, Y., Muylaert, C., Wyns, A., Vlummens, P., De Veirman, K., Vanderkerken, K., Zaal, E., Berkers, C., Moreaux, J., De Bruyne, E. & Menu, E., 1 Jan 2024, In: Haematologica. 109, 1, p. 256-271 16 p.Research output: Contribution to journal › Article › Academic › peer-review
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Specific labeling of newly synthesized lipopolysaccharide via metabolic incorporation of azido-galactose
Xu, Y., Wang, X., Zaal, E. A., Berkers, C. R., Lorent, J. H., Heise, T., Cox, R., Pieters, R. J. & Breukink, E., May 2024, In: Biochimica et Biophysica Acta - Molecular and Cell Biology of Lipids. 1869, 4, 11 p., 159467.Research output: Contribution to journal › Article › Academic › peer-review
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The unusual kinetics of lactate dehydrogenase of Schistosoma mansoni and their role in the rapid metabolic switch after penetration of the mammalian host
Bexkens, M. L., Martin, O. M. F., van den Heuvel, J. M., Schmitz, M. G. J., Teusink, B., Bakker, B. M., van Hellemond, J. J., Haanstra, J. R., Walkinshaw, M. D. & Tielens, A. G. M., Jun 2024, In: International Journal for Parasitology. 54, 7, p. 367-378 12 p.Research output: Contribution to journal › Article › Academic › peer-review
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Treatment of intestinal and liver features in cystic fibrosis mice by the osmotic laxative polyethylene glycol
Bertolini, A., Bloks, V. W., Wilmink, M., Bos, E., van de Peppel, I. P., Eilers, R., Prins, S., Thomas, R., de Bruin, A., Verkade, H. & Jonker, J. W., May 2024, In: Journal of Cystic Fibrosis. 23, 3, p. 461-473 13 p.Research output: Contribution to journal › Article › Academic › peer-review
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2023
Acute joint inflammation induces a sharp increase in the number of synovial fluid EVs and modifies their phospholipid profile
Varela, L., van de Lest, C. H. A., Boere, J., Libregts, S. F. W. M., Lozano-Andrés, E., van Weeren, P. R. & Wauben, M. H. M., Oct 2023, In: Biochimica et Biophysica Acta - Molecular and Cell Biology of Lipids. 1868, 10, 13 p., 159367.Research output: Contribution to journal › Article › Academic › peer-review
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Cell-Free RNA from Plasma in Patients with Neuroblastoma: Exploring the Technical and Clinical Potential
Lak, N. S. M., Seijger, A., van Zogchel, L. M. J., Gelineau, N. U., Javadi, A., Zappeij-Kannegieter, L., Bongiovanni, L., Andriessen, A., Stutterheim, J., van der Schoot, C. E., de Bruin, A. & Tytgat, G. A. M., 1 Apr 2023, In: Cancers. 15, 7, p. 1-16 16 p., 2108.Research output: Contribution to journal › Article › Academic › peer-review
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Cellular polyploidy in organ homeostasis and regeneration
Fang, J., de Bruin, A., Villunger, A., Schiffelers, R., Lei, Z. & Sluijter, J. P. G., 1 Aug 2023, In: Protein and Cell. 14, 8, p. 560-578 19 p.Research output: Contribution to journal › Article › Academic › peer-review
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Characterization of acrosin and acrosin binding protein as novel CRISP2 interacting proteins in boar spermatozoa
Zhang, M., Chiozzi, R. Z., Bromfield, E. G., Heck, A. J., Helms, J. B. & Gadella, B. M., Oct 2023, In: Andrology. 11, 7, p. 1460-1471 12 p.Research output: Contribution to journal › Article › Academic › peer-review
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Crosstalk between androgen receptor and WNT/β-catenin signaling causes sex-specific adrenocortical hyperplasia in mice
Lyraki, R., Grabek, A., Tison, A., Weerasinghe-Arachchige, L.-C., Peitzsch, M., Bechman, N., Youssef, S. A., de Bruin, A., Bakker, E. R. M., Claessens, F., Chaboissier, M.-C. & Schedl, A., 1 Jun 2023, In: Disease Models & Mechanisms. 16, 6, 15 p., dmm050053.Research output: Contribution to journal › Article › Academic › peer-review
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Deletion of SERF2 in mice delays embryonic development and alters amyloid deposit structure in the brain
Stroo, E., Janssen, L., Sin, O., Hogewerf, W., Koster, M., Harkema, L., Youssef, S. A., Beschorner, N., Wolters, A. H., Bakker, B., Becker, L., Garrett, L., Marschall, S., Hoelter, S. M., Wurst, W., Fuchs, H., Gailus-Durner, V., Hrabe de Angelis, M., Thathiah, A. & Foijer, F. & 5 others, , 1 Jul 2023, In: Life Science Alliance. 6, 7, 18 p., e202201730.Research output: Contribution to journal › Article › Academic › peer-review
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Detection and Characterization of Feline Calicivirus Associated with Paw and Mouth Disease
Palombieri, A., Sarchese, V., Giordano, M. V., Fruci, P., Crisi, P. E., Aste, G., Bongiovanni, L., Rinaldi, V., Sposato, A., Camero, M., Lanave, G., Martella, V., Marsilio, F., Di Martino, B. & Di Profio, F., Jan 2023, In: Animals. 13, 1, 12 p., 65.Research output: Contribution to journal › Article › Academic › peer-review
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Development and characterization of agonistic antibodies targeting the Ig-like 1 domain of MuSK
Lim, J. L., Augustinus, R., Plomp, J. J., Roya-Kouchaki, K., Vergoossen, D. L. E., Fillié-Grijpma, Y., Struijk, J., Thomas, R., Salvatori, D., Steyaert, C., Blanchetot, C., Vanhauwaert, R., Silence, K., van der Maarel, S. M., Verschuuren, J. J. & Huijbers, M. G., 8 May 2023, In: Scientific Reports. 13, 1, 16 p., 7478.Research output: Contribution to journal › Article › Academic › peer-review
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Editorial: The role of E2F transcription factors in cancer
Iglesias-Ara, A. & Westendorp, B., 2023, In: Frontiers in Oncology. 13, p. 1-2 2 p., 1355610.Research output: Contribution to journal › Article › Academic › peer-review
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