Physics research: Debye Institute for Nanomaterials Science

2025

2D Rhodium-Isocyanide Frameworks

Huang, S., Yan, P., Han, Z., Wu, H., Wang, Y., Zhang, J., Yuan, L., Fu, S., Wen, G., Zhu, J., Bonn, M., Wang, H. I., Cao, K. & Zhuang, X., 25 Mar 2025, (E-pub ahead of print) In: Advanced Materials. 2502192.

Research output: Contribution to journal › Article › Academic › peer-review

Adaptive contrast enhancement and effect of non-linear exponential merit function on computer-generated holograms

Liu, J., Pivnenko, M., Sui, X. & Chu, D., 1 Mar 2025, In: Applied Optics. 64, 7, p. B72-B81

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Collective dynamics of intelligent active Brownian particles with visual perception and velocity alignment in 3D: spheres, rods, and worms

Liu, Z. & Dijkstra, M., 28 Feb 2025, In: Soft Matter. 21, 8, p. 1529-1544 16 p.

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Defects Enhance Stability in 12-fold Symmetric Soft-Matter Quasicrystals

Ulugöl, A., Hardeman, R. J., Smallenburg, F. & Filion, L., 14 Mar 2025, In: Physical Review Letters. 134, 10, 6 p., 108201.

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Determination of absolute intramolecular distances in proteins using anomalous X-ray scattering interferometry

Stubhan, S., Baptist, A. V., Körösy, C., Narducci, A., Moya Muñoz, G. G., Wendler, N., Lak, A., Sztucki, M., Cordes, T. & Lipfert, J., 2025, In: Nanoscale. 17, 6, p. 3322-3330 9 p.

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Dimensional evolution of charge mobility and porosity in covalent organic frameworks

Fu, S., Li, X., Wen, G., Guo, Y., Addicoat, M. A., Bonn, M., Jin, E., Müllen, K. & Wang, H. I., 5 Mar 2025, In: Nature Communications. 16, 1, 2219.

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Interface-Tailored Secondary Excitation and Ultrafast Charge/Energy Transfer in Ti₃C₂T_x-MoS₂ Heterostructure Films

Zhang, J., Muñoz-Mármol, R., Fu, S., Li, X., Zheng, W., Villa, A., Paternò, G. M., Pohl, D., Tahn, A., Hambsch, M., Mannsfeld, S. C. B., Li, D., Xu, H., Guo, Q., Wang, H. I., Scotognella, F., Yu, M. & Feng, X., 19 Mar 2025, In: Journal of the American Chemical Society. 147, 11, p. 10012-10022 11 p.

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Kinetic phase diagram for two-step nucleation in colloid-polymer mixtures

Gispen, W., Bolhuis, P. G. & Dijkstra, M., 7 Apr 2025, In: The Journal of chemical physics. 162, 13, 16 p., 134901.

Research output: Contribution to journal › Article › Academic › peer-review

Learning Neural Free-Energy Functionals with Pair-Correlation Matching

Dijkman, J., Dijkstra, M., Van Roij, R., Welling, M., Van De Meent, J. W. & Ensing, B., 7 Feb 2025, In: Physical Review Letters. 134, 5, 056103.

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Mechanically Stable PMMA-Based Large-Area Nano-Channels with Sub-10 nm Depth

Liu, M., Reimer, T., Wang, Y., Kläui, M., Xing, Y., Gui, X., Cao, Y., Berger, R., Wang, H. & Bonn, M., 4 Mar 2025, In: Advanced Materials Technologies. 10, 5, 2401172.

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Microtubule flexibility, microtubule-based nucleation and ROP pattern co-alignment enhance protoxylem microtubule patterning

Jacobs, B., Saltini, M., Molenaar, J., Filion, L. & Deinum, E. E., 27 Jan 2025, In: Quantitative Plant Biology. 6, e2.

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Multiscale X-ray scattering elucidates activation and deactivation of oxide-derived copper electrocatalysts for CO₂ reduction

de Ruiter, J., Benning, V. R. M., Yang, S., den Hartigh, B. J., Wang, H., Prins, P. T., Dorresteijn, J. M., Janssens, J. C. L., Manna, G., Petukhov, A. V., Weckhuysen, B. M., Rabouw, F. T. & van der Stam, W., 3 Jan 2025, In: Nature Communications. 16, 1, 11 p., 373.

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Operando Luminescence Thermometry for Hydrocarbon Conversion Catalysis: Dealing with Dynamic Changes in Catalyst Optical Properties

Vogel, R., Groefsema, D. W., van den Bulk, M. A., Jacobs, T. S., Prins, P. T., Rabouw, F. T. & Weckhuysen, B. M., 9 Apr 2025, In: ACS applied materials & interfaces. 17, 14, p. 21215–21222

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Phosphorus-Enhanced Bimetallic Single-Atom Catalysts for Hydrogen Evolution

Tao, X., Liu, Y., Lu, R., Liu, J., Wang, H. I., Yang, J., Bonn, M., Müllen, K. & Zhou, Y., 4 Mar 2025, In: Advanced Energy Materials. 15, 9, 2404167.

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Quantifying elemental colocation in nanostructured materials using energy-dispersive X-ray spectroscopy

Helfferich, K. H., Meeldijk, J. D., van Huis, M. A., van der Hoeven, J. E. S. & de Jongh, P. E., May 2025, In: Ultramicroscopy. 271, 8 p., 114123.

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Rational Construction of Layered Two-Dimensional Conjugated Metal-Organic Frameworks with Room-Temperature Quantum Coherence

Lu, Y., Fu, Y., Hu, Z., Feng, S., Torabi, M., Gao, L., Fu, S., Wang, Z., Huang, C., Huang, X., Wang, M., Israel, N., Dmitrieva, E., Wang, H. I., Bonn, M., Samorì, P., Dong, R., Coronado, E. & Feng, X., 12 Mar 2025, In: Journal of the American Chemical Society. 147, 10, p. 8778-8784 7 p.

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Rolling of stimuli-bent cylindrical robots using contact finite element simulations

He, S., Yu, H., Kouwenhoven, M. B. N., Paoletti, P., Dijkstra, M. & Xuan, C., 11 Mar 2025, (E-pub ahead of print) In: Soft Matter.

Research output: Contribution to journal › Article › Academic › peer-review

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Seeing nanoscale electrocatalytic reactions at individual MoS2 particles under an optical microscope: probing sub-mM oxygen reduction reaction

Afsahi, N., Zhang, Z., Faez, S., Noël, J.-M., Panda, M. R., Majumder, M., Naseri, N., Lemineur, J.-F. & Kanoufi, F., 2025, In: Faraday Discussions. 257, p. 107-125 19 p.

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Skeletal Nitrogen Functionalization of Isostructural 2D Conjugated MOFs for Enhancement of the Dual-Ion Storage Capacity

Sporrer, L., Guo, Q., Li, X., Wrzesinska-Lashkova, A., Reichmayr, F., Fu, S., Wang, H. I., Bonn, M., Li, X., Laval-Schmidt, P. A., Wang, M., Lu, Y., Vaynzof, Y., Yu, M., Feng, X. & Dong, R., 3 Feb 2025, In: Angewandte Chemie - International Edition. 64, 6, e202418390.

Research output: Contribution to journal › Article › Academic › peer-review

Synthetic control over lattice strain in trimetallic AuCu-core Pt-shell nanoparticles

Jonasse, J. P., Perxés Perich, M., Turner, S. J. & van der Hoeven, J. E. S., 28 Mar 2025, In: Nanoscale. 17, 12, p. 7100-7113

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The bcc coating of Lennard-Jones crystal nuclei vanishes with a change of local structure detection algorithm

Gispen, W., Pérez de Alba Ortíz, A. & Dijkstra, M., 14 Jan 2025, In: Journal of Chemical Physics. 162, 2, 024502.

Research output: Contribution to journal › Article › Academic › peer-review

Uniform and Stable Pd-Ni Nanocatalysts for Cinnamaldehyde Hydrogenation

Helfferich, K. H., van Nieuwkerk, K. M., van Silfhout, A., Tierney, G. F., Erne, B. H., van den Brink, P. J., van der Hoeven, J. E. S., de Jong, K. P. & de Jongh, P. E., 20 Mar 2025, In: Journal of Physical Chemistry C. 129, 11, p. 5437-5448 12 p.

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2024

Accurate Drift-Invariant Single-Molecule Force Calibration Using the Hadamard Variance

Pritzl, S. D., Ulugöl, A., Körösy, C., Filion, L. & Lipfert, J., 19 Nov 2024, In: Biophysical Journal. 123, 22, p. 3964-3976 13 p.

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Achiral hard bananas assemble double-twist skyrmions and blue phases

Subert, R., Campos-Villalobos, G. & Dijkstra, M., 8 Aug 2024, In: Nature Communications. 15, 1, 11 p., 6780.

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A Cu₃BHT-Graphene van der Waals Heterostructure with Strong Interlayer Coupling for Highly Efficient Photoinduced Charge Separation

Wang, Z., Fu, S., Zhang, W., Liang, B., Liu, T. J., Hambsch, M., Pöhls, J. F., Wu, Y., Zhang, J., Lan, T., Li, X., Qi, H., Polozij, M., Mannsfeld, S. C. B., Kaiser, U., Bonn, M., Weitz, R. T., Heine, T., Parkin, S. S. P. & Wang, H. I. & 2 others, Dong, R. & Feng, X., 23 May 2024, In: Advanced Materials. 36, 21, 2311454.

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A mean-field theory for predicting single polymer collapse induced by neutral crowders

Chaboche, Q., Campos-Villalobos, G., Giunta, G., Dijkstra, M., Cosentino Lagomarsino, M. & Scolari, V. F., 2024, In: Soft Matter. 20, 15, p. 3271-3282 12 p.

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Anchoring PdOx clusters on defective alumina for improved catalytic methane oxidation.

Yu, X., Genz, N. S., Mendes, R. G., Ye, X., Meirer, F., Nachtegaal, M., Monai, M. & Weckhuysen, B. M., 1 Aug 2024, In: Nature Communications. 15, 1, 12 p., 6494.

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Characterization of the Edge States in Colloidal Bi₂Se₃ Platelets

Moes, J. R., Vliem, J. F., Monteiro Campos de Melo, P., Wigmans, T. C., Botello-Méndez, A. R., Mendes, R. G., Brenk, E. F. V., Swart, I., Licerán, L. M., Stoof, H., Delerue, C., Zanolli, Z. & Vanmaekelbergh, D., May 2024, In: Nano Letters. 24, 17, p. 5110–5116 7 p.

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Colloidal hard spheres: Triumphs, challenges, and mysteries

Royall, C. P., Charbonneau, P., Dijkstra, M., Russo, J., Smallenburg, F., Speck, T. & Valeriani, C., Oct 2024, In: Reviews of Modern Physics. 96, 4, 045003.

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Compositional engineering of interfacial charge transfer in van der Waals heterostructures of graphene and transition metal dichalcogenides

Wen, G., Fu, S., Bonn, M. & Wang, H. I., 7 Aug 2024, In: Journal of Chemical Physics. 161, 5, 6 p., 054714.

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Control of the Hydroquinone/Benzoquinone Redox State in High-Mobility Semiconducting Conjugated Coordination Polymers

Huang, X., Li, Y., Fu, S., Ma, C., Lu, Y., Wang, M., Zhang, P., Li, Z., He, F., Huang, C., Liao, Z., Zou, Y., Zhou, S., Helm, M., Petkov, P. S., Wang, H. I., Bonn, M., Li, J., Xu, W. & Dong, R. & 1 others, Feng, X., May 2024, In: Angewandte Chemie - International Edition. 63, 20, e202320091.

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Cove-Edged Chiral Graphene Nanoribbons with Chirality-Dependent Bandgap and Carrier Mobility

Liu, K., Zheng, W., Osella, S., Qiu, Z. L., Böckmann, S., Niu, W., Meingast, L., Komber, H., Obermann, S., Gillen, R., Bonn, M., Hansen, M. R., Maultzsch, J., Wang, H. I., Ma, J. & Feng, X., 10 Jan 2024, In: Journal of the American Chemical Society. 146, 1, p. 1026–1034 9 p.

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Curvature-directed anchoring and defect structure of colloidal smectic liquid crystals in confinement

Jull, E. I. L., Campos-Villalobos, G., Tang, Q., Dijkstra, M. & Tran, L., Nov 2024, In: PNAS Nexus. 3, 11, 12 p., pgae470.

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Depletion-induced crystallization of anisotropic triblock colloids

Camerin, F., Marín-Aguilar, S. & Dijkstra, M., 7 Mar 2024, In: Nanoscale. 16, 9, p. 4724-4736 13 p.

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Direct laser patterning of ruthenium below the optical diffraction limit

Cruciani, L., Vreugdenhil, M., van Vliet, S., Abram, E., van Oosten, D., Bliem, R., van Druten, K. & Planken, P., 22 Apr 2024, In: Applied Physics Letters. 124, 17, 6 p., 171902.

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Efficient Defect-Driven Cation Exchange beyond the Nanoscale Semiconductors toward Antibacterial Functionalization

Polivtseva, S., Volobujeva, O., Kuznietsov, I., Kaupmees, R., Danilson, M., Krustok, J., Molaiyan, P., Hu, T., Lassi, U., Klopov, M., van Gog, H., van Huis, M. A., Kaur, H., Ivask, A., Rosenberg, M., Gathergood, N., Ni, C. & Grossberg-Kuusk, M., 13 Nov 2024, In: ACS Applied Materials and Interfaces. 16, 45, p. 62871-62882 12 p.

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Epigenetic Histone Modifications H3K36me3 and H4K5/8/12/16ac Induce Open Polynucleosome Conformations via Different Mechanisms

Lin, Y. Y., Müller, P., Karagianni, E., Hepp, N., Mueller-Planitz, F., Vanderlinden, W. & Lipfert, J., 15 Aug 2024, In: Journal of Molecular Biology. 436, 16, 18 p., 168671.

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Estimation of Temperature Homogeneity in MEMS-Based Heating Nanochips via Quantitative HAADF-STEM Tomography

Chen, Q., Skorikov, A., van der Hoeven, J. E. S., van Blaaderen, A., Albrecht, W., Pérez-Garza, H. H. & Bals, S., Feb 2024, In: Particle and Particle Systems Characterization. 41, 2, 8 p., 2300070.

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Exploring protein-mediated compaction of DNA by coarse-grained simulations and unsupervised learning

de Jager, M., Kolbeck, P. J., Vanderlinden, W., Lipfert, J. & Filion, L., 17 Sept 2024, In: Biophysical Journal. 123, 18, p. 3231-3241 11 p.

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Fast event-driven simulations for soft spheres: from dynamics to Laves phase nucleation

Castagnède, A., Filion, L. & Smallenburg, F., 14 Jul 2024, In: Journal of Chemical Physics. 161, 2, 10 p., 024116.

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Ferrous Pyrophosphate and Mixed Divalent Pyrophosphates as Delivery Systems for Essential Minerals

Moslehi, N., van Eekelen, M., Velikov, K. P. & Kegel, W. K., 5 Jun 2024, In: ACS Food Science & Technology. 4, 6, p. 1388–1401 14 p.

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Imaging spinor Bose gases using off-axis holography

Blaznik, N., Smits, J., Gutierrez, M. D. & van der Straten, P., 5 Aug 2024, In: Physical Review A. 110, 2, p. 1-8 8 p., 023303.

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Inverse design of crystals and quasicrystals in a non-additive binary mixture of hard disks

Bedolla-Montiel, E. A., Lange, J. T., Pérez de Alba Ortíz, A. & Dijkstra, M., 21 Jun 2024, In: The Journal of chemical physics. 160, 24, 12 p., 244902.

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Label-Free Time-Resolved Monitoring of Photolipid Bilayer Isomerization by Plasmonic Sensing

Zhang, J., Schuknecht, F., Habermann, L., Pattis, A., Heine, J., Pritzl, S. D., Trauner, D. & Lohmüller, T., 4 Apr 2024, In: Advanced Optical Materials. 12, 10, 2302266.

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M₁₂L₂₄ nanospheres as supramolecular templates for the controlled synthesis of Ir-nanoclusters and their use in the chemo-selective hydrogenation of nitro styrene

Metz, L. L., Ham, R., Bobylev, E. O., Brouwer, K. J. H., van Blaaderen, A., van de Poll, R. C. J., Drozhzhin, V. R., Hensen, E. J. M. & Reek, J. N. H., 21 Dec 2024, In: Chemical Science. 15, 47, p. 20022-20029 8 p.

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Microscopic mechanism of water-assisted diffusional phase transitions in inorganic metal halide perovskites

Liu, J., Hao, X., van Huis, M. A. & Fan, Z., 7 Nov 2024, In: The Journal of chemical physics. 161, 17, 9 p., 174705.

Research output: Contribution to journal › Article › Academic › peer-review

Molecular Accessibility and Diffusion of Resorufin in Zeolite Crystals

Maris, J. J. E., Parker, L. A., Stanciakova, K., Nikolopoulos, N., Berendsen, K. M. H., van Blaaderen, A., Meirer, F., Rabouw, F. T. & Weckhuysen, B. M., 2 Jan 2024, In: Chemistry-A European Journal. 30, 1, e202302553.

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MXenes with ordered triatomic-layer borate polyanion terminations

Li, D., Zheng, W., Gali, S. M., Sobczak, K., Horák, M., Polčák, J., Lopatik, N., Li, Z., Zhang, J., Sabaghi, D., Zhou, S., Michałowski, P. P., Zschech, E., Brunner, E., Donten, M., Šikola, T., Bonn, M., Wang, H. I., Beljonne, D. & Yu, M. & 1 others, Feng, X., Aug 2024, In: Nature Materials. 23, 8, p. 1085-1092 8 p.

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Noise-robust latent vector reconstruction in ptychography using deep generative models

Seifert, J., Shao, Y. & Mosk, A. P., 10 Jan 2024, In: Optics Express. 32, 1, p. 1020-1033 14 p.

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Numerical Study of Neutral and Charged Microgel Suspensions: From Single-Particle to Collective Behavior

Del Monte, G. & Zaccarelli, E., 18 Dec 2024, In: Physical Review X. 14, 4, 041067.

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Physics research: Debye Institute for Nanomaterials Science

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