Bijvoet Centre for Biomolecular Research

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  • 2023

    Information-Driven Antibody-Antigen Modelling with HADDOCK

    Ambrosetti, F., Jandova, Z. & Bonvin, A. M. J. J., 10 Nov 2023, Methods in Molecular Biology. Tsumoto, K. & Kuroda, D. (eds.). 1 ed. New York: Humana Press, Vol. 2552. p. 267-282 16 p. (Methods in Molecular Biology; vol. 2552).

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  • Oxygenation of Anandamide by Lipoxygenases

    van Zadelhoff, G. & van der Stelt, M., 25 Sept 2023, Endocannabinoid Signaling: Methods and Protocols. Maccarrone, M. (ed.). 2 ed. New York: Humana Press, p. 307-316 10 p. (Methods in Molecular Biology; vol. 2576).

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  • Physical Chemistry

    Hinrichs, W. & van Gestel, R., 16 Jun 2023, Practical Pharmaceutics: An International Guideline for the Preparation, Care and Use of Medicinal Products, Second Edition. Springer, p. 93-125 33 p.

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  • Sample Preparation of Isolated Mitochondria for Cryoelectron Tomography and In Situ Studies of Translation

    Thärichen, L., Englmeier, R. & Förster, F., 12 May 2023, Methods in Molecular Biology: Methods and Protocols. Barrientos, A. & Fontanesi, F. (eds.). 1 ed. New York: Humana Press, p. 75-88 14 p. (Methods in Molecular Biology; vol. 2661).

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  • 2022

    Cellular Cryo-Electron Tomography

    Judernatz, J. H., Roelofs, M. C. & Zeev-Ben-Mordehai, T., 1 Jan 2022, Encyclopedia of Cell Biology: Volume 1-6, Second Edition. Bradshaw, R. A., Hart, G. W. & Stahl, P. D. (eds.). Elsevier, Vol. 2. p. 4-15 12 p.

    Research output: Chapter in Book/Report/Conference proceeding › Chapter › Academic › peer-review

  • No dance, no partner! A tale of receptor flexibility in docking and virtual screening

    Basciu, A., Callea, L., Motta, S., Bonvin, A. M. J. J., Bonati, L. & Vargiu, A. V., Jan 2022, Virtual Screening and Drug Docking. Caballero, J. (ed.). Academic Press, p. 43-97 55 p. (Annual Reports in Medicinal Chemistry; vol. 59).

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  • Optimal Use of 2',7'-Dichlorofluorescein Diacetate in Cultured Hepatocytes

    Reiniers, M. J., de Haan, L. R., Reeskamp, L. F., Broekgaarden, M., Hoekstra, R., van Golen, R. F. & Heger, M., 4 May 2022, Photodynamic Therapy: Methods and Protocols. Broekgaarden, M., Zhang, H., Korbelik, M., Hamblin, M. R. & Heger, M. (eds.). 1 ed. New York: Humana Press, p. 721-747 27 p. (Methods in Molecular Biology; vol. 2451).

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  • 2021

    Methods | Mass spectrometry of native complexes

    Rose, R. J. & Heck, A. J. R., 29 Jul 2021, Encyclopedia of Biological Chemistry III. 3 ed. Elsevier, p. 780-785 6 p.

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  • Solid-State NMR Spectroscopy for Studying Microtubules and Microtubule-Associated Proteins

    Luo, Y., Xiang, S., Paioni, A. L., Adler, A., Hooikaas, P. J., Jijumon, A. S., Janke, C., Akhmanova, A. & Baldus, M., 2021, Structural Proteomics: High-Throughput Methods. Owens, R. J. (ed.). 3 ed. Humana Press, p. 193-201 9 p. (Methods in Molecular Biology; vol. 2305).

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  • 2020

    Cellular solid-state NMR spectroscopy

    Damman, R., Narasimhan, S., Weingarth, M. & Baldus, M., 1 Jan 2020, In-cell NMR Spectroscopy: From Molecular Sciences to Cell Biology. Ito, Y., Dotsch, V. & Shirakawa, M. (eds.). 21 ed. Royal Society of Chemistry, p. 131-151 21 p. (New Developments in NMR; vol. 2020-January, no. 21).

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  • Protein–Protein Modeling Using Cryo-EM Restraints

    Trellet, M., van Zundert, G. & Bonvin, A. M. J. J., 1 Feb 2020, Structural Bioinformatics: Methods and Protocols. Gáspári, Z. (ed.). New York, NY: Humana Press, p. 145-162 18 p. (Methods in Molecular Biology; vol. 2112).

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  • Recognition of Nucleosomes by Chromatin Factors: Lessons from Data-Driven Docking-Based Structures of Nucleosome-Protein Complexes

    Horn, V. & van Ingen, H., 2020, Chromatin and Epigenetics. Logie, C. & Knoch, T. A. (eds.). IntechOpen, p. 21-46

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  • 2019

    26S Proteasome: Structure and Function

    Förster, F. G., 19 Jun 2019, Reference Module in Biomedical Sciences. p. 595-600

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  • 26S Proteasome: Structure and Function

    Förster, F. G., 2019, Reference Module in Biomedical Sciences.

    Research output: Chapter in Book/Report/Conference proceeding › Chapter › Academic

  • Functions and Mechanisms of the Human Ribosome-Translocon Complex

    Lang, S., Nguyen, D., Pfeffer, S., Förster, F., Helms, V. & Zimmermann, R., 1 Jan 2019, Subcellular Biochemistry. Cham: Springer, p. 83-141 59 p. (Subcellular Biochemistry; vol. 93).

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  • Hsp90 Chaperone in Disease

    Rüdiger, S. G. D. & Ferrari, L., 15 Nov 2019, Heat Shock Protein 90 in Human Diseases and Disorders. Asea, A. A. A. & Kaur, P. (eds.). 1 ed. Springer, p. 473-491 (Heat Shock Proteins; vol. 19).

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  • 2018

    CHAPTER 1.1. Disulfide Bonds in Protein Folding and Stability

    Feige, M. J., Braakman, I. & Hendershot, L. M., 31 Jul 2018, Oxidative Folding of Proteins: Basic Principles, Cellular Regulation and Engineering. Royal Society of Chemistry, p. 1-33 (Chemical Biology Series).

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  • Computational Tools for the Structural Characterization of Proteins and Their Complexes from Sequence-Evolutionary Data

    Preto, A. J., Almeida, J. G., Schaarschmidt, J., Xue, L. C., Moreira, I. S. & Bonvin, A. M. J. J., 13 Mar 2018, Encyclopedia of Analytical Chemistry: Applications, Theory and Instrumentation. Meyers, R. A. (ed.). Wiley, p. 1-19

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  • Electron Tomography and Correlative Approaches in Platelet Studies

    Engberts, K. B., Seinen, C., Geerts, W. J. C. & Heijnen, H. F. G., 2018, Platelets and Megakaryocytes. Volume 4, Advanced Protocols and Perspectives. Humana Press, p. 55-79 25 p. (Methods in Molecular Biology; vol. 1812).

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  • Microscale Thermophoresis Analysis of Chromatin Interactions

    Corbeski, I., Horn, V., Van Der Valk, R. A., Le Paige, U. B., Dame, R. T. & Van Ingen, H., 15 Aug 2018, Bacterial Chromatin: Methods and Protocols. Dame, R. T. (ed.). Humana Press, p. 177-197 (Methods in Molecular Biology; vol. 1837).

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  • Rapid prediction of multi-dimensional NMR data sets using FANDAS

    Narasimhan, S., Mance, D., de Agrela Pinto, C., Weingarth, M., Bonvin, A. M. J. J. & Baldus, M., 2018, Protein NMR: Methods and Protocols. Ghose, R. (ed.). New York: Humana Press, p. 111-132 22 p. (Methods in Molecular Biology; vol. 1688).

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  • Solid-state NMR on complex biomolecules: Methods and applications

    Mance, D., Weingarth, M. & Baldus, M., 13 Jun 2018, Modern Magnetic Resonance. Webb, G. A. (ed.). 2 ed. Springer, p. 487-503 17 p.

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  • 2017

    Computer-Aided Drug Design Approaches to Study Key Therapeutic Targets in Alzheimer’s Disease

    Lemos, A., Melo, R., de Sousa Moreira, I. & Cordeiro, M. N. D. S., 2017, Computational Modeling of Drugs Against Alzheimer’s Disease. Springer, p. 61-106 45 p. (Neuromethods; vol. 132).

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  • Information-Driven, Ensemble Flexible Peptide Docking Using HADDOCK

    Geng, C., Narasimhan, S., Garcia Lopes Maia Rodrigues, J. & Bonvin, A. M. J. J., 2017, Modeling Peptide-Protein Interactions: Methods and Protocols. Schueler-Furman, O. & London, N. (eds.). New York: Springer, Vol. 1561. p. 109-138 30 p. (Methods in Molecular Biology; vol. 1561).

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  • Optimized Enrichment of Phosphoproteomes by Fe-IMAC Column Chromatography

    Ruprecht, B., Koch, H., Domasinska, P., Frejno, M., Kuster, B. & Lemeer, S., 2017, Proteomics: Methods and Protocols. Walker, J. M., Comai, L., Katz, J. E. & Mallick, P. (eds.). Hertfordshore, UK, Vol. 1550. p. 47-60 14 p. ( Methods in Molecular Biology; vol. 1550).

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  • Prediction of Biomolecular Complexes

    Vangone, A., Oliva, R., Cavallo, L. & Bonvin, A. M. J. J., 25 Apr 2017, From Protein Structure to Function with Bioinformatics. Rigden, D. J. (ed.). 2 ed. Dordrecht: Springer, p. 265-292 28 p.

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  • Simplifying Access to 3, 4-Di-O-acetyl-1, 5 anhydro-2, 6-dideoxy-D- lyxo-hex-1-enitol (3, 4-Di-O-acetyl-d-fucal)

    Gagarinov, I. A., Srivastava, A. D., Boons, G. J. & Visansirikul, S., 5 Oct 2017, Carbohydrate Chemistry. Vogel, C. & Murphy, P. (eds.). Boca Raton: CRC Press, p. 195-200 6 p. (Proven Synthetic Methods; vol. 4).

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  • 2016

    High-Resolution 3D structure determination of kaliotoxin by solid-state NMR spectroscopy

    Korukottu, J., Schneider, R., Vijayan, V., Lange, A., Pongs, O., Becker, S., Baldus, M. & Zweckstetter, M., 19 Apr 2016, Spectroscopy: New Uses and Implications. Apple Academic Press, p. 117-139 23 p.

    Research output: Chapter in Book/Report/Conference proceeding › Chapter › Academic › peer-review

  • Oxygenation of anandamide by lipoxygenases

    van Zadelhoff, G. & van der Stelt, M., 2016, Methods in Molecular Biology. Humana Press, Vol. 1412. p. 217-225 9 p. (Methods in Molecular Biology; vol. 1412).

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  • Prediction of Protein Quaternary Structures

    Vaseghi, A., Faridounnia, M., Shokrollahzade, S., Jahandideh, S. & Chou, K.-C., 2016, Pattern recognition in computational molecular biology: techniques and approaches. Elloumi, M. (ed.). Hoboken, NJ: Wiley, p. 251-265 15 p. (Wiley series on bioinformatics: computational techniques and engineering).

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  • 2015

    Information-driven structural modelling of protein-protein interactions

    Garcia Lopes Maia Rodrigues, J., Karaca, E. & Bonvin, A. M. J. J., 2015, Molecular Modeling of Proteins. Kukol, A. (ed.). second edition ed. Humana Press, Vol. IV. p. 399-424 26 p. (Methods in Molecular Biology; vol. 1215).

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  • NMR-based modeling and refinement of protein 3D structures

    Vranken, W. F., Vuister, G. W. & Bonvin, A. M. J. J., 1 Jan 2015, Molecular Modeling of Proteins . Humana Press, p. 351-380 30 p. (Methods in Molecular Biology; vol. 1215).

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  • Sharing the cell's bounty - organelle inheritance in yeast.

    Knoblach, B., Rachubinski, R. A., Adeyo, O., Horn, P. J., Lee, S., Binns, D. D., Chandrahas, A., Chapman, K. D., Goodman, J. M., Agrawal, G., Subramani, S., Altmann, K. H., Frank, M., Neumann, D., Jakobs, S., Westermann, B., Arai, S., Noda, Y., Kainuma, S. & Wada, I. & 584 others, Yoda, K., Babour, A., Bicknell, A. A., Tourtellotte, J., Niwa, M., Bartholomew, C. R., Hardy, C. F., Beach, D. L., Thibodeaux, J., Maddox-Hyttel, P., Yeh, E., Bloom, K., Bleazard, W., McCaffery, J. M., King, E. J., Bale, A. S., Mozdy, A., Tieu, Q., Nunnari, J., Shaw, J. M., Boettcher, B., Marquez-Lago, T. T., Bayer, M., Weiss, E. L., Barral, Y., Boldogh, I. R., Ramcharan, S. L., Yang, H. C., Pon, L. A., Frei, S. B., Rahl, P. B., Nussbaum, M., Briggs, B. J., Calero, M., Janeczko, S., Regan, A. D., Chen, C. Z., Barral, Y., Whittaker, G. R., Catlett, N. L., Weisman, L. S., Catlett, N. L., Duex, J. E., Tang, F., Weisman, L. S., Cerveny, K. L., Studer, S. L., Jensen, R. E., Sesaki, H., Chao, J. T., Wong, A. K., Tavassoli, S., Young, B. P., Chruscicki, A., Ying, F., Howe, L. J., Mayor, T., Foster, L. J., Loewen, C. J., Chernyakov, I., Santiago-Tirado, F., Bretscher, A., Chung, S., Takizawa, P. A., Clay, L., Caudron, F., Denoth-Lippuner, A., Boettcher, B., Frei, S. B., Snapp, E. L., Barral, Y., Colombi, P., Webster, B. M., Fröhlich, F., Lusk, C. P., David, C. S., Koch, J., Oeljeklaus, S., Laernsack, A., Melchior, S., Wiese, S., Schummer, A., Erdmann, R., Warscheid, B., Brocard, C., Delille, H. K., Alves, R., Schrader, M., Du, Y., Pypaert, M., Novick, P., Ferro-Novick, S., Elbaz-Alon, Y., Rosenfeld-Gur, E., Shinder, V., Futerman, A. H., Geiger, T., Schuldiner, M., Erjavec, N., Nyström, T., Estrada, P., Kim, J., Coleman, J., Walker, L., Dunn, B., Takizawa, P., Novick, P., Ferro-Novick, S., Evangelista, M., Pruyne, D., Amberg, D. C., Boone, C., Bretscher, A., Eves, P. T., Jin, Y., Brunner, M., Weisman, L. S., Fagarasanu, M., Fagarasanu, A., Tam, Y. Y. C., Aitchison, J. D., Rachubinski, R. A., Fagarasanu, A., Fagarasanu, M., Eitzen, G. A., Aitchison, J. D., Rachubinski, R. A., Fagarasanu, A., Fagarasanu, M., Rachubinski, R. A., Fagarasanu, A., Mast, F. D., Knoblach, B., Jin, Y., Brunner, M. J., Logan, M. R., Glover, J. N., Eitzen, G. A., Aitchison, J. D., Weisman, L. S., Fagarasanu, A., Mast, F. D., Knoblach, B., Rachubinski, R. A., Falcón, A. A., Aris, J. P., Fehrenbacher, K. L., Yang, H. C., Gay, A. C., Huckaba, T. M., Pon, L. A., Förtsch, J., Hummel, E., Krist, M., Westermann, B., Frederick, R. L., Okamoto, K., Shaw, J. M., Friedman, J. R., Nunnari, J., Friedman, J. R., Lackner, L. L., West, C. M., DiBenedetto, J. R., Nunnari, J., Voeltz, G. K., Gehlen, L. R., Nagai, S., Shimada, K., Pfeifer-Meister, L., Taddei, A., Gasser, S. M., Heil-Chapdelaine, R. A., Oberle, J. R., Cooper, J. A., Henderson, K. A., Hughes, A. L., Gottschling, D. E., Hermann, G. J., Thatcher, J. W., Mills, P. J., Hales, K. G., Fuller, M. T., Nunnari, J., Shaw, J. M., Higuchi, R., Vevea, J. D., Swayne, T. C., Chojnowski, R., Hill, A. V., Boldogh, I. R., Pon, L. A., Higuchi-Sanabria, R., Pernice, W. M., Vevea, J. D., Wolken, D. M. A., Boldogh, I. R., Pon, L. A., Hill, S. M., Hao, X., Liu, B., Nyström, T., Hobbs, A. E., Srinivasan, M., McCaffery, J. M., Jensen, R. E., Hoepfner, D., Berg, M. V. D., Philippsen, P., Tabak, H. F., Hettema, E. H., Hoepfner, D., Schildknegt, D., Braakman, I., Philippsen, P., Tabak, H. F., Hönscher, C., Mari, M., Auffarth, K., Bohnert, M., Griffith, J., Geerts, W., van der Laan, M., Cabrera, M., Reggiori, F., Ungermann, C., Hoppins, S., Collins, S. R., Cassidy-Stone, A., Hummel, E., Devay, R. M., Lackner, L. L., Westermann, B., Schuldiner, M., Weissman, J. S., Nunnari, J., Huckaba, T. M., Lipkin, T., Pon, L. A., Huffaker, T. C., Thomas, M. J. H., Botstein, D., Hughes, A. L., Gottschling, D. E., Ingerman, E., Perkins, E. M., Marino, M., Mears, J. A., McCaffery, J. M., Hinshaw, J. E., Nunnari, J., Ishikawa, K., Catlett, N. L., Novak, J. L., Tang, F., Nau, J. J., Weisman, L. S., Itoh, T., Watabe, A., Toh-E, A., Matsui, Y., Itoh, T., Toh-E, A., Matsui, Y., Jacobs, W. C. H., Adams, A. E., Szaniszlo, P. J., Pringle, J. R., Jacquier, N., Choudhary, V., Mari, M., Toulmay, A., Reggiori, F., Schneiter, R., Jin, Y., Sultana, A., Gandhi, P., Franklin, E., Hamamoto, S., Khan, A. R., Munson, M., Schekman, R., Weisman, L. S., Kaganovich, D., Kopito, R., Frydman, J., Khmelinskii, A., Keller, P. J., Helms-Lorenz, M., Schiebel, E., Knop, M., Klecker, T., Scholz, D., Förtsch, J., Westermann, B., Klecker, T., Böckler, S., Westermann, B., Knoblach, B., Rachubinski, R. A., Knoblach, B., Rachubinski, R. A., Knoblach, B., Sun, X., Coquelle, N., Fagarasanu, A., Poirier, R. L., Rachubinski, R. A., Koch, J., Pranjic, K., Huber, L. A., Ellinger, A., Hartig, A., Kragler, F., Brocard, C., Kornmann, B., Currie, E., Collins, S. R., Schuldiner, M., Nunnari, J., Weissman, J. S., Walter, P., Kuravi, K., Nagotu, S., Krikken, A. M., Sjollema, K. A., Deckers, M. J. M., Erdmann, R., Veenhuis, M., van der Klei, I. J., Lackner, L. L., Ping, H., Graef, M., Murley, A., Nunnari, J., Lewandowska, A., MacFarlane, G. J., Shaw, J. M., Lindstrom, D. L., Leverich, C. K., Henderson, K. A., Gottschling, D. E., Lipatova, Z., Tokarev, A. V., Jin, Y., Mulholland, J., Weisman, L. S., Segev, N., Larsson, L., Caballero, A. R., Hao, X., Oling, D., Grantham, J., Nyström, T., Luedeke, C., Frei, S. B., Sbalzarini, I., Schwarz, H., Spang, A., Barral, Y., Makio, T., Lapetina, D. L., Wozniak, R. W., Manford, A. G., Stefan, C. J., Yuan, H. L., Macgurn, J. A., Emr, S. D., McCormick, M. A., Mason, A. G., Guyenet, S. J., Dang, W., Molina Garza, R. S., Ting, M. K., Moller Sorensen, R., Berger, S. L., Kaeberlein, M., Pillus, L., McFaline-Figueroa, J. R., Vevea, J., Swayne, T. C., Zhou, C., Liu, C., Leung, G., Boldogh, I. R., Pon, L. A., Meeusen, S., Nunnari, J., Menendez-Benito, V., van Deventer, S. J. H., Jimenez-Garcia, V., Roy-Luzarraga, M., Leeuwen, F. V., Neefjes, J., Motley, A. M., Hettema, E. H., Mozdy, A. D., McCaffery, J. M., Shaw, J. M., Munck, J. M., Motley, A. M., Nuttall, J. M., Hettema, E. H., Murley, A., Lackner, L. L., Osman, C., West, C. M., Voeltz, G. K., Walter, P., Nunnari, J., Ouellet, J., Barral, Y., Pashkova, N., Jin, Y., Ramaswamy, S., Weisman, L. S., Peng, Y., Weisman, L. S., Pfanner, N., van der Laan, M., Amati, P., Capaldi, R. A., Caudy, A. A., Chacinska, A., Darshi, M., Deckers, M. J. M., Hoppins, S., Icho, T., Prinz, W. A., Pruyne, D., Evangelista, M., Bi, E., Zigmond, S., Bretscher, A., Boone, C., Rafelski, S. M., Viana, M. P., Chan, Y. H., Thorn, K. S., Yam, P., Fung, J. C., Li, H., Costa, L. F., Marshall, W. F., Rossanese, O. W., Reinke, C. A., Bevis, B. J., Hammond, A. T., Sears, I. B., O'Connor, J., Glick, B. S., Rowland, M. A., Voeltz, G. K., Sagot, I., Rodal, A. A., Moseley, J., Goode, B. L., Pellman, D., Santiago-Tirado, F. H., Legesse-Miller, A., Schott, D. L., Bretscher, A., Scheckhuber, C. Q., Erjavec, N., Tinazli, A., Hamann, A., Nyström, T., Osiewacz, H. D., Scheckhuber, C. Q., Wanger, R. A., Mignat, C. A., Osiewacz, H. D., Schmid, M., Jaedicke, A., Du, T. G., Jansen, R. P., Schrader, M., Bonekamp, N. A., Islinger, M., Sellers, J. R., Veigel, C., Sesaki, H., Jensen, R. E., Shcheprova, Z., Baldi, S., Frei, S. B., Gonnet, G., Barral, Y., Shepard, K. A., Gerber, A. P., Jambhekar, A., Takizawa, P. A., Brown, P. O., Herschlag, D., DeRisi, J. L., Vale, R. D., Sinclair, D. A., Guarente, L., Sinclair, D. A., Mills, K., Guarente, L., Song, J., Yang, Q., Yang, J., Larsson, L., Hao, X., Zhu, X., Malmgren-Hill, S., Cvijovic, M., Fernandez-Rodriguez, J., Grantham, J., Spokoini, R., Moldavski, O., Nahmias, Y., England, J. L., Schuldiner, M., Kaganovich, D., Stefan, C. J., Manford, A. G., Emr, S. D., Swayne, T. C., Zhou, C., Boldogh, I. R., Charalel, J. K., McFaline-Figueroa, J. R., Thoms, S., Yang, C., Leung, G., McInnes, J., Erdmann, R., Tang, F., Kauffman, E. J., Novak, J. L., Nau, J. J., Catlett, N. L., Weisman, L. S., Thoms, S., Harms, I., Kalies, K. U., Gärtner, J., Toulmay, A., Prinz, W. A., Vevea, J. D., Wolken, D. M., Swayne, T. C., White, A. B., Pon, L. A., Vevea, J. D., Swayne, T. C., Boldogh, I. R., Pon, L. A., Weisman, L. S., Westermann, B., de Wolf, W. H., Kilic, A., Schrul, B., Helms-Lorenz, M., Schwappach, B., Seedorf, M., Wolinski, H., Kolb, D., Hermann, S., Koning, R. I., Kohlwein, S. D., Yaffe, M. P., Yan, M., Rachubinski, D. A., Joshi, S. K., Rachubinski, R. A., Subramani, S., Yang, H. C., Palazzo, A., Swayne, T. C., Pon, L. A., Yau, R. G., Peng, Y., Valiathan, R. R., Birkeland, S. R., Wilson, T. E., Weisman, L. S., Yin, H., Pruyne, D., Huffaker, T. C. & Bretscher, A., 15 Feb 2015, Journal of cell science. The Company of Biologists Ltd, p. 621-30 10 p. (Journal of cell science; vol. 128).

    Research output: Chapter in Book/Report/Conference proceeding › Chapter › Academic › peer-review

  • 2014

    Deletion of the highly conserved N-Glycan at Asn260 of HIV-1 gp120 affects folding and lysosomal degradation of gp120, and results in loss of viral infectivity

    Mathys, L., François, K. O., Quandte, M., Braakman, I. & Balzarini, J., 26 Jun 2014, PLoS ONE. Public Library of Science, (PLoS ONE; vol. 9).

    Research output: Chapter in Book/Report/Conference proceeding › Chapter › Academic › peer-review

  • Introduction to Biological Solid-State NMR

    Weingarth, M. H. & Baldus, M., 2014, Advances in biological solid-state nmr - proteinsand membrane-active peptides. Separovic, F. & Naito, A. (eds.). London: Royal Society of Chemistry, 384 p. (New Developments in NMR; no. 3).

    Research output: Chapter in Book/Report/Conference proceeding › Chapter › Academic › peer-review

  • Modeling protein-protein complexes using the HADDOCK webserver "modeling protein complexes with HADDOCK"

    van Zundert, G. C. P. & Bonvin, A. M. J. J., 1 Jan 2014, Protein Structure Prediction. p. 163-179 17 p. (Methods in Molecular Biology; vol. 1137).

    Research output: Chapter in Book/Report/Conference proceeding › Chapter › Academic › peer-review

  • 2013

    Antimicrobial peptides produced by microorganisms

    Paiva, A. D. & Breukink, E., 1 Jan 2013, Antimicrobial Peptides and Innate Immunity. Springer, p. 53-95 43 p.

    Research output: Chapter in Book/Report/Conference proceeding › Chapter › Academic › peer-review

  • Complement Factor D

    Forneris, F. & Gros, P., 29 Aug 2013, Handbook of Proteolytic Enzymes. Elsevier, Vol. 3. p. 2841-2848 8 p.

    Research output: Chapter in Book/Report/Conference proceeding › Chapter › Academic › peer-review

  • Haddock

    Bonvin, A. M. J. J., van Dijk, M., Karaca, E., Kastritis, P., Melquiond, A. S. J., Schmitz, C. & de Vries, S. J., 2013, Encyclopedia of Biophysics. Roberts, G. C. K. (ed.). Berlin: Springer, p. 943-945 3 p.

    Research output: Chapter in Book/Report/Conference proceeding › Chapter › Academic › peer-review

    Open Access
    File

  • Peptidyl-Lys Metalloendopeptidase

    Heck, A. J. R., 2013, Handbook of Proteolytic Enzymes. Elsevier Ltd, Vol. 1. p. 1266-1270 5 p.

    Research output: Chapter in Book/Report/Conference proceeding › Chapter › Academic › peer-review

  • Protein folding in the endoplasmic reticulum

    Braakman, I. & Hebert, D. N., 2013, The Endoplasmic Reticulum : a subject collection from Cold Spring Harbor perspectives in biology. R. Schekman S. Ferro-Novick, T. R. (ed.). Cold Spring Harbor Laboratory, (Cold Spring Harbor Perspectives in Biology; no. 5).

    Research output: Chapter in Book/Report/Conference proceeding › Chapter › Academic › peer-review

  • Proteolysis, complex formation and conformational changes drive the complement pathways

    Gros, P. & Forneris, F., 8 May 2013, Advancing Methods for Biomolecular Crystallography. Randy, R., Urzhumtsev, A., Alexandre, U. & Lunin, V. (eds.). p. 297-307 11 p. (NATO Science for Peace and Security Series A: Chemistry and Biology).

    Research output: Chapter in Book/Report/Conference proceeding › Chapter › Academic › peer-review

  • 2012

    Investigation of Quadruplex Structure Under Physiological Conditions Using In-Cell NMR

    Hänsel, R., Foldynová-Trantírková, S., Dötsch, V. & Trantirek, L., 2012, Quadruplex Nucleic Acids. Berlin: Springer, p. 47-65 19 p. (Topics in current chemistry; no. 330).

    Research output: Chapter in Book/Report/Conference proceeding › Chapter › Academic › peer-review

  • Predicting and Dissecting High-order Molecular Complexity by Information-driven Biomolecular Docking

    Kastritis, P. & Bonvin, A. M. J. J., 2012, Antimicrobial drug discovery: emerging strategies. Tegos, G. & Mylonakis, E. (eds.). Wallingford: CABI, p. 232-246 357 p. (Advances in molecular and cellular microbiology; no. 22).

    Research output: Chapter in Book/Report/Conference proceeding › Chapter › Academic › peer-review

    Open Access
    File

  • Probing the specificity of protein-protein interactions by quantitative chemical proteomics

    Kovanich, D., Aye, T. T., Heck, A. J. R. & Scholten, A., 2012, Chemical Proteomics. p. 167-181 15 p.

    Research output: Chapter in Book/Report/Conference proceeding › Chapter › Academic

  • Protein–DNA Interactions

    Kovacic, L. & Boelens, R., 14 Mar 2012, NMR of biomolecules : towards mechanistic systems biology. Bertini, I., McGreevy, K. S. & Parigi, G. (eds.). Weinheim: Wiley, p. 238-252 612 p.

    Research output: Chapter in Book/Report/Conference proceeding › Chapter › Academic › peer-review

  • Protein–Protein Docking with HADDOCK

    Schmitz, C., Melquiond, A. S. J., de Vries, S. J., Karaca, E., van Dijk, M., Kastritis, P. & Bonvin, A. M. J. J., 14 Mar 2012, NMR of biomolecules : towards mechanistic systems biology. Bertini, I., McGreevy, K. S. & Parigi, G. (eds.). Weinheim: Wiley, p. 520-535 612 p.

    Research output: Chapter in Book/Report/Conference proceeding › Chapter › Academic › peer-review

    Open Access
    File

  • Sphingolipid Asymmetry and Transmembrane Translocation in Mammalian Cells

    van Meer, G., Neumann, S. & Haberkant, P., 2012, Transmembrane dynamics of lipids. Devaux, P. (ed.). Hoboken, N.J.: Wiley, p. 65-74 414 p. (Wiley series in protein and peptide science).

    Research output: Chapter in Book/Report/Conference proceeding › Chapter › Academic

  • 2011

    Adhesion/growth-regulatory galectins: insights into their ligand selectivity using natural glycoproteins and glycotopes

    Wu, A. M., Singh, T., Liu, J.-H., André, S., Lensch, M., Siebert, H.-C., Krzeminski, M. N., Bonvin, A. M. J. J., Kaltner, H. & Wu, J. H., 2011, The Molecular Immunology of Complex Carbohydrates-3. 3 ed. New York : Springer, Vol. 705. p. 117-141 25 p. (Advances in Experimental Medicine and Biology).

    Research output: Chapter in Book/Report/Conference proceeding › Chapter › Academic › peer-review

    Open Access
    File

  • A protocol on the use of titanium dioxide chromatography for phosphoproteomics

    Pinkse, M. W. H., Lemeer, S. M. & Heck, A. J. R., 2011, Gel free proteomics; Methods in Molecular Biology. Springer, p. 215-228 14 p. (753).

    Research output: Chapter in Book/Report/Conference proceeding › Chapter › Professional